Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COCFMAFH_144 | 2877 | 3362 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| COCFMAFH_118 | 2697 | 4634 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.94 | AJ222769.3 |
| COCFMAFH_5 | 2532 | 3302 | ANT(4')-Ia | ARO:3002623 | ANT(4')-Ia | 99.60 | 101.19 | K02551.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| COCFMAFH_5 | 2541 | 3302 | aadD | Amikacin, Tobramycin | 99.87 | 100.00 | M19465 |
| COCFMAFH_41 | 174 | 942 | ant(9)-Ia | Spectinomycin | 99.87 | 98.21 | X02588 |
| COCFMAFH_125 | 329 | 1686 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.19 | 98.40 | AY081910 |
| COCFMAFH_144 | 2877 | 3362 | lnu(A) | Lincomycin | 98.97 | 100.00 | M14039 |
| COCFMAFH_118 | 2697 | 4609 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.64 | FN396364 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COCFMAFH_5 | 2532 | 3299 | aadD1 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ia | EXACTX | 100.00 | 100.00 | WP_032488330.1 |
| COCFMAFH_144 | 2877 | 3359 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| COCFMAFH_118 | 2697 | 4610 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_003672618.1 |
| COCFMAFH_125 | 349 | 1683 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.10 | 97.16 | WP_002294500.1 |
| COCFMAFH_41 | 174 | 950 | ant(9)-Ia | aminoglycoside nucleotidyltransferase ANT(9)-Ia | INTERNAL_STOP | 98.84 | 99.62 | WP_000067268.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| COCFMAFH_72 | 51768 | 51574 | CspA | 1.36e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |