Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 2 | 6.32 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDLIIIGM_70 | 22886 | 23380 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| MDLIIIGM_83 | 9398 | 11323 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.31 | AB039845.1 |
| MDLIIIGM_107 | 5671 | 6453 | ANT(9)-Ia | ARO:3002630 | ANT(9)-Ia | 100.00 | 100.00 | X02588.1 |
| MDLIIIGM_5 | 729 | 1214 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MDLIIIGM_107 | 5671 | 6453 | ant(9)-Ia | Spectinomycin | 99.87 | 100.00 | X02588 |
| MDLIIIGM_107 | 6579 | 7290 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 97.27 | X03216 |
| MDLIIIGM_83 | 11518 | 12893 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.49 | 99.93 | AY081910 |
| MDLIIIGM_83 | 9398 | 11323 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | X75073 |
| MDLIIIGM_70 | 22886 | 23380 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
| MDLIIIGM_5 | 729 | 1214 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDLIIIGM_107 | 5671 | 6450 | ant(9)-Ia | aminoglycoside nucleotidyltransferase ANT(9)-Ia | EXACTX | 100.00 | 100.00 | WP_000067268.1 |
| MDLIIIGM_107 | 6582 | 7289 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 99.58 | 97.12 | WP_001072201.1 |
| MDLIIIGM_5 | 732 | 1214 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| MDLIIIGM_83 | 9398 | 11320 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.38 | 100.00 | WP_000691727.1 |
| MDLIIIGM_83 | 11517 | 12890 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
| MDLIIIGM_70 | 22889 | 23380 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MDLIIIGM_80 | 47873 | 47166 | WalR | 1.41e-115 | transcriptional regulatory protein | 85.17 | 100.43 | EPH95667 |
| MDLIIIGM_44 | 30575 | 30378 | CspR | 7.63e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| MDLIIIGM_44 | 30575 | 30381 | CspA | 3.72e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |