Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 2 | 4.47 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LDOBDOKD_74 | 6585 | 7289 | ErmA | ARO:3000347 | ErmA | 98.71 | 96.30 | X03216.1 |
| LDOBDOKD_74 | 5677 | 6459 | ANT(9)-Ia | ARO:3002630 | ANT(9)-Ia | 100.00 | 100.00 | X02588.1 |
| LDOBDOKD_66 | 1053 | 2978 | tet(M) | ARO:3000186 | tet(M) | 99.06 | 100.31 | AB039845.1 |
| LDOBDOKD_79 | 425 | 910 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LDOBDOKD_74 | 5677 | 6459 | ant(9)-Ia | Spectinomycin | 99.87 | 100.00 | X02588 |
| LDOBDOKD_74 | 6585 | 7276 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 94.54 | X03216 |
| LDOBDOKD_66 | 1053 | 2978 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | X75073 |
| LDOBDOKD_79 | 425 | 910 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LDOBDOKD_74 | 5677 | 6456 | ant(9)-Ia | aminoglycoside nucleotidyltransferase ANT(9)-Ia | EXACTX | 100.00 | 100.00 | WP_000067268.1 |
| LDOBDOKD_79 | 425 | 907 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| LDOBDOKD_66 | 1056 | 2978 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.38 | 100.00 | WP_000691727.1 |
| LDOBDOKD_74 | 6588 | 7283 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 98.71 | 95.47 | WP_001072201.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LDOBDOKD_22 | 22174 | 21467 | WalR | 1.51e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| LDOBDOKD_72 | 301 | 104 | CspR | 1.20e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| LDOBDOKD_72 | 301 | 107 | CspA | 5.83e-29 | cold shock protein | 81.54 | 98.48 | CAA62903 |