Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 2 | 5.39 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMPGFCNB_19 | 12754 | 14673 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.00 | AB039845.1 |
| CMPGFCNB_19 | 11184 | 12560 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| CMPGFCNB_47 | 7264 | 8127 | ANT(6)-Ia | ARO:3002626 | ANT(6)-Ia | 100.00 | 100.00 | KF648874.1 |
| CMPGFCNB_83 | 1810 | 2544 | ErmA | ARO:3000347 | ErmA | 85.19 | 100.41 | X03216.1 |
| CMPGFCNB_93 | 1152 | 1646 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMPGFCNB_47 | 7264 | 8127 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF421157 |
| CMPGFCNB_19 | 11184 | 12560 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.71 | 100.00 | AY081910 |
| CMPGFCNB_83 | 1810 | 2535 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 99.18 | EU348758 |
| CMPGFCNB_19 | 12754 | 14673 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | AM990992 |
| CMPGFCNB_93 | 1152 | 1646 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMPGFCNB_47 | 7267 | 8127 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_002294505.1 |
| CMPGFCNB_19 | 12757 | 14673 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.37 | 100.00 | WP_000691727.1 |
| CMPGFCNB_19 | 11187 | 12560 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| CMPGFCNB_93 | 1152 | 1643 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| CMPGFCNB_83 | 1810 | 2538 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 85.19 | 100.00 | WP_001072197.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CMPGFCNB_41 | 37559 | 38266 | WalR | 2.90e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| CMPGFCNB_11 | 21742 | 21939 | CspR | 7.24e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| CMPGFCNB_11 | 21742 | 21936 | CspA | 3.53e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |