Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 2 | 4.47 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJCPCPEK_39 | 11890 | 13266 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| HJCPCPEK_39 | 9777 | 11696 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.00 | AB039845.1 |
| HJCPCPEK_70 | 2527 | 3261 | ErmA | ARO:3000347 | ErmA | 85.19 | 100.41 | X03216.1 |
| HJCPCPEK_80 | 1235 | 1729 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HJCPCPEK_39 | 11890 | 13266 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.71 | 100.00 | AY081910 |
| HJCPCPEK_70 | 2536 | 3261 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 99.18 | EU348758 |
| HJCPCPEK_80 | 1235 | 1729 | lnu(C) | Lincomycin | 99.19 | 100.00 | AY928180 |
| HJCPCPEK_39 | 9777 | 11696 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | AM990992 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJCPCPEK_39 | 9777 | 11693 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.37 | 100.00 | WP_000691727.1 |
| HJCPCPEK_39 | 11890 | 13263 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| HJCPCPEK_80 | 1235 | 1726 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| HJCPCPEK_70 | 2533 | 3261 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 85.19 | 100.00 | WP_001072197.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HJCPCPEK_96 | 23024 | 22317 | WalR | 1.93e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| HJCPCPEK_3 | 20598 | 20795 | CspR | 6.26e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| HJCPCPEK_3 | 20598 | 20792 | CspA | 3.05e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |