Genome ID:GCA_002289985.1 PPRS_table
 

Potential risk score of uploaded strain

ARGs VFs PGs PPRS
3023.61

CARD

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
LAPPPGAB_461998421909tet(M)ARO:3000186tet(M)99.06100.31AB039845.1
LAPPPGAB_8724073144ErmBARO:3000375ErmB99.1898.79AF242872.1
LAPPPGAB_9811501644lnuCARO:3002837lnuC98.17100.00AY928180.1

Resfinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
LAPPPGAB_8724073144erm(B)Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S100.00100.00X72021
LAPPPGAB_461998421909tet(M)Doxycycline, Tetracycline, Minocycline99.58100.00X75073
LAPPPGAB_9811501644lnu(C)Lincomycin98.79100.00AY928180

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
LAPPPGAB_8724073141erm(B)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)EXACTX100.00100.00WP_001038795.1
LAPPPGAB_461998421906tet(M)tetracycline resistance ribosomal protection protein Tet(M)BLASTX99.69100.00WP_000691727.1
LAPPPGAB_9811501641lnu(C)lincosamide nucleotidyltransferase Lnu(C)BLASTX98.17100.00WP_063851341.1

Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
LAPPPGAB_1082141020703WalR1.82e-116transcriptional regulatory protein85.59100.43EPH95667
LAPPPGAB_1476717868CspR6.24e-29cold shock protein81.82100.00AAO82613
LAPPPGAB_1476717865CspA3.04e-28cold shock protein81.5498.48CAA62903