Genome ID:GCA_002549935.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 1 | 3.74 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEAHNCHJ_99 | 33961 | 34698 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
| LEAHNCHJ_155 | 14679 | 15302 | catS | ARO:3002688 | catS | 85.98 | 126.22 | X74948.1 |
| LEAHNCHJ_173 | 3771 | 5690 | tet(W) | ARO:3000194 | tet(W) | 99.84 | 100.00 | AJ222769.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LEAHNCHJ_99 | 33961 | 34698 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| LEAHNCHJ_173 | 3771 | 5690 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.90 | 100.00 | AJ427422 |
| LEAHNCHJ_155 | 14766 | 15302 | catS | Chloramphenicol | 89.20 | 100.00 | X74948 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEAHNCHJ_99 | 33961 | 34695 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| LEAHNCHJ_173 | 3771 | 5687 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_002586627.1 |
| LEAHNCHJ_155 | 14679 | 15296 | catP | type A-11 chloramphenicol O-acetyltransferase CatP | BLASTX | 81.07 | 99.52 | WP_002570989.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LEAHNCHJ_14 | 1 | 1363 | fbp54 | 0.0 | FBPs | Adherence | 99.41 | 82.16 | WP_011227179 |
| LEAHNCHJ_24 | 1 | 903 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 99.34 | 78.93 | - |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LEAHNCHJ_83 | 1120 | 452 | CovR | 1.15e-128 | serves to repress GAS virulence factor-encoding genes | 80.72 | 97.37 | ACE75886 |