Genome ID：GCA_002860785.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
2	19	34	39.00

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
No hit found

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
JNLCIPBI_21	222388	223605	mef(A)	Erythromycin, Azithromycin	100.00	100.00	U83667
JNLCIPBI_21	223725	225188	msr(D)	Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	AF274302

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
JNLCIPBI_21	222388	223602	mef(A)	macrolide efflux MFS transporter Mef(A)	EXACTX	100.00	100.00	WP_000417519.1
JNLCIPBI_21	223725	225185	msr(D)	ABC-F type ribosomal protection protein Msr(D)	EXACTX	100.00	100.00	WP_000420313.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
JNLCIPBI_12	159597	160565	STER_RS07090	0.0	Capsule	Immune modulation	98.45	100.00	WP_011681443
JNLCIPBI_12	161533	162786	STER_RS07100	0.0	Capsule	Immune modulation	96.81	99.52	WP_011681445
JNLCIPBI_12	158880	159595	STER_RS07085	0.0	Capsule	Immune modulation	96.09	99.86	WP_011681442
JNLCIPBI_12	162905	163756	rfbD	0.0	Capsule	Immune modulation	94.72	100.00	WP_014621820
JNLCIPBI_21	147302	148762	STU_RS14650	0.0	Capsule	Immune modulation	93.91	100.14	WP_011226049
JNLCIPBI_21	147302	148762	STER_RS05320	0.0	Capsule	Immune modulation	93.91	100.00	WP_011681177
JNLCIPBI_21	147302	148762	STR_RS05265	0.0	Capsule	Immune modulation	93.16	100.14	WP_041827043
JNLCIPBI_21	151003	152370	STU_RS14630	0.0	Capsule	Immune modulation	93.13	100.00	WP_011226045
JNLCIPBI_12	157764	158534	STER_RS07075	0.0	Capsule	Immune modulation	93.00	99.10	WP_011681440
JNLCIPBI_21	151003	152368	STER_RS05300	0.0	Capsule	Immune modulation	92.97	99.85	WP_011681173
JNLCIPBI_23	141815	142408	STR_RS05880	0.0	Capsule	Immune modulation	92.42	100.00	WP_011226149
JNLCIPBI_23	141815	142408	STER_RS06030	0.0	Capsule	Immune modulation	92.26	100.00	WP_011226149
JNLCIPBI_23	141815	142408	STU_RS15260	0.0	Capsule	Immune modulation	92.26	100.00	WP_011226149
JNLCIPBI_21	148763	149494	STU_RS14645	0.0	Capsule	Immune modulation	91.94	100.00	WP_011226048
JNLCIPBI_23	140946	141815	rfbA	0.0	Capsule	Immune modulation	91.61	100.00	WP_011681286
JNLCIPBI_21	148763	149494	STER_RS05315	0.0	Capsule	Immune modulation	91.53	100.00	WP_011681176
JNLCIPBI_21	148763	149494	STR_RS05260	0.0	Capsule	Immune modulation	90.98	100.00	WP_011227248
JNLCIPBI_21	150205	150945	STER_RS05305	0.0	Capsule	Immune modulation	90.84	99.87	WP_011681174
JNLCIPBI_4	43562	45216	fbp54	0.0	FBPs	Adherence	90.52	99.70	WP_011227179
JNLCIPBI_21	150205	150945	STU_RS14635	0.0	Capsule	Immune modulation	89.89	99.87	WP_011226046
JNLCIPBI_21	150205	150940	STR_RS05250	0.0	Capsule	Immune modulation	89.55	98.00	WP_011227246
JNLCIPBI_22	69323	70228	cbpD	0.0	Autolysin	Exoenzyme	88.85	93.50	WP_082302295
JNLCIPBI_1	274530	275833	eno	0.0	Streptococcal enolase	Exoenzyme	88.17	99.54	WP_000022832
JNLCIPBI_11	14419	15429	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	87.36	99.80	WP_002986042
JNLCIPBI_21	149503	150195	STU_RS14640	0.0	Capsule	Immune modulation	85.45	99.86	WP_011226047
JNLCIPBI_21	149503	150195	STR_RS05255	0.0	Capsule	Immune modulation	85.16	99.86	WP_011227247
JNLCIPBI_21	149503	150195	STER_RS05310	0.0	Capsule	Immune modulation	84.87	99.86	WP_011681175
JNLCIPBI_23	142611	143657	rfbB	0.0	Capsule	Immune modulation	84.54	99.90	WP_002263087
JNLCIPBI_2	33270	34031	srtA	0.0	Sortase A	Exoenzyme	84.40	99.87	-
JNLCIPBI_8	1941	3224	tig/ropA	0.0	Trigger factor	Stress survival	80.68	99.61	WP_000107753

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
JNLCIPBI_2	30581	29598	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	96.95	100.00	AAK75326
JNLCIPBI_2	42169	43242	MntE	0.0	manganese homeostasis	96.09	99.72	ABF32167
JNLCIPBI_25	48194	45888	pfl2(Sp_0459)	0.0	formate acetyltransferase	94.54	99.22	AAK74619
JNLCIPBI_2	61226	63472	metE	0.0	methionine biosynthesis enzymes	93.19	100.00	AAK74738
JNLCIPBI_1	184064	185032	spr0084	0.0	pathogenitcity related	93.19	98.48	AAK98888
JNLCIPBI_26	61627	63108	SPD_0310	0.0	UPF0371 protein SPD_0310	92.92	100.00	ABJ54480
JNLCIPBI_27	82402	83373	prsA2	0.0	ribose-phosphate pyrophosphokinase	91.36	100.00	ABF36968
JNLCIPBI_6	19051	12503	PrtA	0.0	serine protease	90.35	101.73	ABJ55268
JNLCIPBI_23	109839	111569	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	90.12	100.00	AAK34199
JNLCIPBI_12	177665	175677	uvrB	0.0	excinuclease ABC, B subunit	89.59	100.00	AE014259_2
JNLCIPBI_12	206070	204919	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	89.58	99.74	AAL00050
JNLCIPBI_27	46892	45414	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.83	100.00	ADE32434
JNLCIPBI_1	274530	275831	Eno	0.0	enolase	86.44	99.77	ABP90468
JNLCIPBI_27	31570	29678	gidA	0.0	tRNA uridine 5-carboxymethylaminomethyl modification enzyme	85.26	98.90	ABP91129
JNLCIPBI_2	66394	64685	PGM	0.0	phosphoglucomutase	84.76	99.65	ACH87041
JNLCIPBI_27	121796	122887	recA	0.0	DNA recombination and repair	84.64	95.36	AAL00560
JNLCIPBI_3	84503	83493	pdh	0.0	pyruvate dehydrogenase	83.09	99.70	ABP91006
JNLCIPBI_4	27713	29074	mnmE	0.0	central tRNA-modifying GTPase	82.67	99.56	ABP90420
JNLCIPBI_1	260122	261012	bglB	4.23e-178	putative phospho--glucosidase	87.88	99.66	AAK33487
JNLCIPBI_2	63662	64519	metF	1.73e-170	methionine biosynthesis enzymes	88.11	99.31	AAK74739
JNLCIPBI_2	106364	105402	SP_0676	3.28e-170	transcription facot	80.69	99.69	AAK74821
JNLCIPBI_6	56233	55562	rr01	1.43e-127	response regulator	84.82	99.56	CAB54566
JNLCIPBI_21	102364	103068	covR	1.05e-126	responder protein	85.53	100.00	AAK71319
JNLCIPBI_2	71061	71732	ciaR	1.51e-124	two component system response regulator	85.71	99.12	AIK75708
JNLCIPBI_2	71061	71729	CiaR	4.26e-124	two-component response regulator	86.55	99.55	AAK74935
JNLCIPBI_21	102364	103068	walR	2.38e-120	DNA-binding response regulator	82.13	100.00	ANC99504
JNLCIPBI_24	100830	101516	CovR	3.41e-120	serves to repress GAS virulence factor-encoding genes	81.66	100.00	ACE75886
JNLCIPBI_27	123061	123456	SpxA2	1.22e-75	transcriptional regulator	91.67	100.00	ERL21461
JNLCIPBI_4	16239	15838	SpxA1	1.49e-70	transcriptional regulator	82.84	100.00	ERL19273
JNLCIPBI_7	6152	5739	GrpE	4.27e-68	protein grpE	81.88	80.59	ABP89267
JNLCIPBI_24	124048	124335	spr0479	3.31e-48	essential gene	85.42	98.97	AAK99283
JNLCIPBI_1	147450	147704	spr1327	1.55e-44	essential gene	92.94	100.00	AAL00131
JNLCIPBI_10	6987	7250	spr0175	1.43e-43	pathogenitcity related	85.23	100.00	AAK98979
JNLCIPBI_10	7813	8079	spr0177	2.00e-42	essential gene	83.15	88.12	AAK98981
JNLCIPBI_8	3391	3882	RopE (M5005_Spy_1611)	2.35e-73	probable DNA-directed RNA polymerase subunit delta	82.93	85.86	AAK34603
JNLCIPBI_25	48194	45894	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	83.22	98.08	MYN69560
JNLCIPBI_3	47813	48832	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	85.88	100.00	ABJ55451