Genome ID:GCA_002864145.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 8 | 8.49 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LKMAKOFG_5 | 3489 | 4865 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.86 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKMAKOFG_5 | 3495 | 4865 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.00 | 99.78 | WP_003242953.1 |
| LKMAKOFG_5 | 5078 | 5596 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 80.35 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LKMAKOFG_12 | 76949 | 78130 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
| LKMAKOFG_12 | 78145 | 78594 | capC | 1.93e-113 | Capsule | Immune modulation | 83.37 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LKMAKOFG_17 | 27966 | 26830 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| LKMAKOFG_28 | 12378 | 11509 | pdxS | 1.34e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| LKMAKOFG_1 | 95092 | 94316 | CodY | 5.68e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| LKMAKOFG_9 | 50351 | 50743 | spxA1 | 2.85e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| LKMAKOFG_4 | 284515 | 284712 | CspA | 2.04e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| LKMAKOFG_3 | 410963 | 410769 | CspD | 2.69e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| LKMAKOFG_6 | 163847 | 164041 | CspB | 4.18e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| LKMAKOFG_4 | 284515 | 284709 | CspR | 2.67e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| LKMAKOFG_2 | 322231 | 323103 | lipA (SAUSA300_0829) | 1.48e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |