Genome ID:GCA_002865705.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 8 | 16.88 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFBIJKNM_11 | 186735 | 187904 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| GFBIJKNM_19 | 178576 | 181146 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.65 | 100.00 | AL009126.3 |
| GFBIJKNM_1 | 161191 | 161784 | tmrB | ARO:3003059 | tmrB | 96.95 | 100.00 | AL009126.3 |
| GFBIJKNM_1 | 113301 | 114740 | lmrB | ARO:3002813 | lmrB | 98.74 | 100.42 | JYFL01000006.1 |
| GFBIJKNM_4 | 87491 | 88345 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
| GFBIJKNM_20 | 85717 | 86055 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| GFBIJKNM_20 | 85400 | 85717 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| GFBIJKNM_4 | 68697 | 69899 | blt | ARO:3003006 | blt | 100.00 | 100.00 | L32599.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GFBIJKNM_4 | 87493 | 88345 | aadK | Streptomycin | 98.59 | 99.77 | M26879 |
| GFBIJKNM_1 | 87032 | 87951 | mph(K) | Spiramycin, Telithromycin | 97.61 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFBIJKNM_4 | 87494 | 88345 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| GFBIJKNM_25 | 69966 | 70484 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| GFBIJKNM_43 | 4306 | 6903 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.60 | 100.00 | WP_087347987.1 |
| GFBIJKNM_26 | 53440 | 54471 | vmlR | ABC-F type ribosomal protection protein VmlR | PARTIALX | 97.38 | 62.71 | WP_003234144.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GFBIJKNM_39 | 2121 | 3263 | capA | 0.0 | Capsule | Immune modulation | 99.74 | 100.00 | NP_391469 |
| GFBIJKNM_13 | 73667 | 74605 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| GFBIJKNM_39 | 3746 | 4927 | capB | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | NP_391471 |
| GFBIJKNM_39 | 3282 | 3731 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| GFBIJKNM_27 | 98579 | 99220 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| GFBIJKNM_13 | 69995 | 70780 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| GFBIJKNM_14 | 85303 | 87066 | dep/capD | 0.0 | Capsule | Immune modulation | 98.87 | 100.00 | NP_389723 |
| GFBIJKNM_13 | 70806 | 72002 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.00 | NP_391079 |
| GFBIJKNM_13 | 74625 | 81761 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.18 | 100.00 | NP_391076 |
| GFBIJKNM_13 | 72020 | 73639 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.78 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GFBIJKNM_36 | 32066 | 33202 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| GFBIJKNM_21 | 12176 | 11307 | pdxS | 1.23e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| GFBIJKNM_40 | 19444 | 20220 | CodY | 1.12e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| GFBIJKNM_3 | 47426 | 47995 | ClpP | 7.71e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| GFBIJKNM_35 | 42668 | 42276 | spxA1 | 4.79e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| GFBIJKNM_35 | 42668 | 42276 | spx | 2.86e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| GFBIJKNM_22 | 35214 | 34972 | SpoVG | 7.67e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| GFBIJKNM_26 | 5975 | 6172 | CspA | 3.67e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| GFBIJKNM_27 | 86614 | 86420 | CspD | 3.30e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| GFBIJKNM_27 | 86614 | 86417 | CspB | 6.85e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |