Genome ID:GCA_002998755.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 7 | 17.83 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OIFGNGMM_10 | 568671 | 569525 | aadK | ARO:3002627 | aadK | 98.24 | 100.00 | AL009126.1 |
| OIFGNGMM_10 | 549882 | 551084 | blt | ARO:3003006 | blt | 99.75 | 100.00 | L32599.1 |
| OIFGNGMM_11 | 425719 | 426036 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| OIFGNGMM_11 | 425381 | 425719 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| OIFGNGMM_10 | 357632 | 358801 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
| OIFGNGMM_12 | 263893 | 266463 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| OIFGNGMM_13 | 187903 | 189549 | vmlR | ARO:3004476 | vmlR | 98.91 | 100.18 | NC_000964.3 |
| OIFGNGMM_14 | 155706 | 156299 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| OIFGNGMM_14 | 105150 | 106589 | lmrB | ARO:3002813 | lmrB | 99.16 | 100.42 | JYFL01000006.1 |
| OIFGNGMM_14 | 92337 | 93257 | mphK | ARO:3004541 | mphK | 97.39 | 100.00 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OIFGNGMM_9 | 34673 | 36049 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.13 | 100.00 | D12567 |
| OIFGNGMM_10 | 568673 | 569525 | aadK | Streptomycin | 98.59 | 99.77 | M26879 |
| OIFGNGMM_14 | 92337 | 93257 | mph(K) | Spiramycin, Telithromycin | 96.96 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OIFGNGMM_9 | 34673 | 36046 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.91 | 100.00 | WP_063856081.1 |
| OIFGNGMM_13 | 187906 | 189549 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.91 | 100.00 | WP_003234144.1 |
| OIFGNGMM_10 | 568674 | 569525 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| OIFGNGMM_14 | 92337 | 93254 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.39 | 100.00 | WP_003246254.1 |
| OIFGNGMM_9 | 38061 | 38579 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| OIFGNGMM_10 | 59636 | 62233 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.71 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OIFGNGMM_10 | 9587 | 11350 | dep/capD | 0.0 | Capsule | Immune modulation | 99.89 | 100.00 | NP_389723 |
| OIFGNGMM_10 | 154783 | 155424 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.84 | 100.00 | NP_390062 |
| OIFGNGMM_9 | 535463 | 536644 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| OIFGNGMM_9 | 941630 | 942415 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.62 | 100.00 | NP_391080 |
| OIFGNGMM_9 | 536659 | 537108 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| OIFGNGMM_9 | 537127 | 538269 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| OIFGNGMM_9 | 946271 | 953407 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.17 | 100.00 | NP_391076 |
| OIFGNGMM_9 | 942441 | 943637 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.91 | 100.00 | NP_391079 |
| OIFGNGMM_9 | 943666 | 945285 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.52 | 100.00 | NP_391078 |
| OIFGNGMM_9 | 945313 | 946251 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.30 | 100.00 | NP_391077 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OIFGNGMM_17 | 31799 | 32935 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| OIFGNGMM_2 | 11332 | 10463 | pdxS | 1.12e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| OIFGNGMM_11 | 737436 | 738212 | CodY | 7.55e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OIFGNGMM_9 | 691150 | 690581 | ClpP | 6.35e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| OIFGNGMM_11 | 276697 | 277089 | spxA1 | 5.94e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| OIFGNGMM_11 | 276697 | 277089 | spx | 3.54e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| OIFGNGMM_1 | 20641 | 20883 | SpoVG | 7.53e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| OIFGNGMM_13 | 139924 | 140121 | CspA | 9.45e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |