Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 4 | 5.39 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EHCCKLDA_1 | 584145 | 585194 | clbA | ARO:3002814 | clbA | 97.42 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EHCCKLDA_1 | 584145 | 585180 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.03 | 98.67 | KR610408 |
| EHCCKLDA_1 | 2630358 | 2631734 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.29 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EHCCKLDA_1 | 584145 | 585188 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.70 | 99.71 | WP_012116915.1 |
| EHCCKLDA_1 | 2630364 | 2631734 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.21 | 99.78 | WP_003242953.1 |
| EHCCKLDA_1 | 1879879 | 1882473 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.34 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| EHCCKLDA_1 | 3548824 | 3550005 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
| EHCCKLDA_1 | 3548360 | 3548809 | capC | 6.96e-112 | Capsule | Immune modulation | 83.37 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EHCCKLDA_1 | 133814 | 134950 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| EHCCKLDA_1 | 19029 | 19898 | pdxS | 3.38e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| EHCCKLDA_1 | 1674258 | 1675034 | CodY | 4.78e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| EHCCKLDA_1 | 3153780 | 3152908 | lipA (SAUSA300_0829) | 1.30e-161 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |