Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 5 | 5.39 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JIMKMDHH_1 | 259137 | 260351 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
| JIMKMDHH_1 | 260477 | 261927 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 92.90 | 99.11 | AF274302 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIMKMDHH_1 | 259137 | 260360 | mef(A) | macrolide efflux MFS transporter Mef(A) | EXACTX | 100.00 | 100.00 | WP_012102963.1 |
| JIMKMDHH_1 | 260477 | 261931 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 92.99 | 99.59 | WP_000420313.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JIMKMDHH_1 | 3452088 | 3450583 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| JIMKMDHH_1 | 79012 | 79881 | pdxS | 3.49e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JIMKMDHH_1 | 1431539 | 1432315 | CodY | 6.25e-127 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| JIMKMDHH_1 | 1431539 | 1432315 | codY | 3.01e-123 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| JIMKMDHH_1 | 992268 | 991699 | ClpP | 1.56e-102 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| JIMKMDHH_1 | 3615377 | 3614691 | WalR | 4.59e-102 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |