Genome ID：GCA_003382375.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
2	2	6	6.63

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
JOKINOCI_23	45744	46793	clbA	ARO:3002814	clbA	92.55	100.00	CP006845.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
JOKINOCI_23	45744	46793	cfr(B)	Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin	89.05	100.00	KR610408

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
JOKINOCI_23	45747	46793	clbA	23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA	BLASTX	92.55	100.00	WP_012116915.1
JOKINOCI_12	679345	681942	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.40	100.00	WP_087347987.1
JOKINOCI_23	49260	49589	satA	streptothricin N-acetyltransferase SatA	PARTIALX	84.55	63.58	WP_003242546.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
JOKINOCI_1	477005	478186	capB	0.0	Capsule	Immune modulation	81.96	99.66	NP_391471
JOKINOCI_1	478201	478650	capC	3.59e-114	Capsule	Immune modulation	83.59	99.78	NP_391470

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
JOKINOCI_24	27657	26521	tufA	0.0	elongation factor Tu	86.54	95.69	AHM69299
JOKINOCI_10	4249	5118	pdxS	2.45e-152	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	84.83	98.31	ACE61268
JOKINOCI_12	334262	335038	CodY	1.36e-124	nutrient-responsive regulator	81.08	100.00	ACJ80679
JOKINOCI_19	256935	257327	spxA1	3.99e-70	redox-responsive transcription factor	83.21	100.00	AAF21893
JOKINOCI_13	10653	10850	CspA	7.91e-33	cold shock protein	90.91	100.00	CAA62903
JOKINOCI_19	39057	38863	CspB	3.79e-28	cold shock protein	84.61	98.48	CAD00094
JOKINOCI_13	10653	10847	CspR	1.04e-27	cold shock protein	80.00	98.48	AAO82613