Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCELFIDJ_1 | 384880 | 386826 | tet(Q) | ARO:3000191 | tet(Q) | 99.84 | 98.63 | Z21523.1 |
| LCELFIDJ_5 | 76684 | 77484 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| LCELFIDJ_51 | 2803 | 4788 | tet(Q) | ARO:3000191 | tet(Q) | 93.34 | 100.61 | Z21523.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCELFIDJ_1 | 384880 | 386792 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 99.33 | Z21523 |
| LCELFIDJ_5 | 76684 | 77484 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| LCELFIDJ_51 | 108 | 1325 | mef(A) | Erythromycin, Azithromycin | 94.99 | 100.00 | AF227520 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCELFIDJ_1 | 384880 | 386793 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.84 | 99.53 | WP_002560998.1 |
| LCELFIDJ_5 | 76684 | 77481 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| LCELFIDJ_51 | 108 | 1328 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| LCELFIDJ_51 | 2803 | 4785 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 96.22 | 100.00 | WP_063856407.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LCELFIDJ_45 | 31543 | 33123 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |