Genome ID:GCA_003665395.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 4 | 16.12 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMOKEECP_1 | 3259810 | 3260661 | aadK | ARO:3002627 | aadK | 98.24 | 99.65 | AL009126.1 |
| PMOKEECP_1 | 3241426 | 3242628 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
| PMOKEECP_1 | 3057169 | 3058338 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
| PMOKEECP_1 | 2105503 | 2105820 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| PMOKEECP_1 | 2105165 | 2105503 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| PMOKEECP_1 | 1594781 | 1597351 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| PMOKEECP_1 | 1253584 | 1255227 | vmlR | ARO:3004476 | vmlR | 98.32 | 100.00 | NC_000964.3 |
| PMOKEECP_1 | 1004405 | 1004998 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| PMOKEECP_1 | 954275 | 955708 | lmrB | ARO:3002813 | lmrB | 99.16 | 100.00 | JYFL01000006.1 |
| PMOKEECP_1 | 939885 | 940805 | mphK | ARO:3004541 | mphK | 98.68 | 100.00 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PMOKEECP_1 | 3259810 | 3260661 | aadK | Streptomycin | 98.48 | 99.65 | M26879 |
| PMOKEECP_1 | 939885 | 940805 | mph(K) | Spiramycin, Telithromycin | 98.05 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMOKEECP_1 | 939885 | 940793 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.68 | 99.02 | WP_003246254.1 |
| PMOKEECP_1 | 3259813 | 3260661 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| PMOKEECP_1 | 1253587 | 1255227 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 96.71 | 99.82 | WP_003234144.1 |
| PMOKEECP_1 | 616731 | 617123 | satA | streptothricin N-acetyltransferase SatA | PARTIALX | 91.60 | 75.72 | WP_003242546.1 |
| PMOKEECP_1 | 2711850 | 2714447 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.48 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PMOKEECP_1 | 121329 | 122510 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| PMOKEECP_1 | 3818920 | 3819705 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| PMOKEECP_1 | 119704 | 120846 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| PMOKEECP_1 | 2656170 | 2657933 | dep/capD | 0.0 | Capsule | Immune modulation | 98.98 | 100.00 | NP_389723 |
| PMOKEECP_1 | 3815095 | 3816033 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.94 | 100.00 | NP_391077 |
| PMOKEECP_1 | 2835611 | 2836252 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.91 | 100.00 | NP_390062 |
| PMOKEECP_1 | 120865 | 121314 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| PMOKEECP_1 | 3817698 | 3818894 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.75 | 100.00 | NP_391079 |
| PMOKEECP_1 | 3807939 | 3815075 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.56 | 100.00 | NP_391076 |
| PMOKEECP_1 | 3816061 | 3817680 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.28 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMOKEECP_1 | 780194 | 781330 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| PMOKEECP_1 | 664720 | 665589 | pdxS | 3.12e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| PMOKEECP_1 | 2422114 | 2422890 | CodY | 3.40e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PMOKEECP_1 | 4166167 | 4166736 | ClpP | 2.52e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |