Genome ID：GCA_004119615.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
11	10	4	15.39

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
KHOMDLFI_1	2515858	2516712	aadK	ARO:3002627	aadK	98.59	100.00	AL009126.1
KHOMDLFI_1	2497382	2498584	blt	ARO:3003006	blt	99.25	100.00	L32599.1
KHOMDLFI_1	1365241	1365558	ykkD	ARO:3003064	ykkD	98.10	100.00	AL009126.1
KHOMDLFI_1	1364903	1365241	ykkC	ARO:3003063	ykkC	98.21	100.00	AL009126.1
KHOMDLFI_1	891122	893692	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	99.65	100.00	AL009126.3
KHOMDLFI_1	603139	604785	vmlR	ARO:3004476	vmlR	98.91	100.18	NC_000964.3
KHOMDLFI_1	334000	334593	tmrB	ARO:3003059	tmrB	99.49	100.00	AL009126.3
KHOMDLFI_1	284900	286333	lmrB	ARO:3002813	lmrB	99.79	100.00	JYFL01000006.1
KHOMDLFI_1	272085	273005	mphK	ARO:3004541	mphK	98.68	100.00	CP010314.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
KHOMDLFI_1	2515858	2516712	aadK	Streptomycin	98.83	100.00	M26879
KHOMDLFI_1	272085	273005	mph(K)	Spiramycin, Telithromycin	98.05	100.00	NC_000964

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
KHOMDLFI_1	603142	604785	vmlR	ABC-F type ribosomal protection protein VmlR	BLASTX	98.91	100.00	WP_003234144.1
KHOMDLFI_1	272085	272993	mphK	macrolide 2'-phosphotransferase MphK	BLASTX	98.68	99.02	WP_003246254.1
KHOMDLFI_1	2515861	2516712	aadK	aminoglycoside 6-adenylyltransferase AadK	BLASTX	98.59	100.00	WP_003229862.1
KHOMDLFI_1	3980468	3980986	satA	streptothricin N-acetyltransferase SatA	BLASTX	91.91	100.00	WP_003242546.1
KHOMDLFI_1	1978329	1980926	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	80.48	100.00	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
KHOMDLFI_1	3512542	3512991	capC	0.0	Capsule	Immune modulation	99.56	100.00	NP_391470
KHOMDLFI_1	3513006	3514187	capB	0.0	Capsule	Immune modulation	99.49	100.00	NP_391471
KHOMDLFI_1	3511381	3512523	capA	0.0	Capsule	Immune modulation	99.39	100.00	NP_391469
KHOMDLFI_1	3057945	3058730	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.36	100.00	NP_391080
KHOMDLFI_1	3054109	3055047	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.15	100.00	NP_391077
KHOMDLFI_1	3056723	3057919	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.00	100.00	NP_391079
KHOMDLFI_1	1925467	1927230	dep/capD	0.0	Capsule	Immune modulation	98.98	100.00	NP_389723
KHOMDLFI_1	2101727	2102368	hlyIII	0.0	Hemolysin III	Exotoxin	98.91	100.00	NP_390062
KHOMDLFI_1	3046953	3054089	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	98.63	100.00	NP_391076
KHOMDLFI_1	3055075	3056694	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	97.04	100.00	NP_391078

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
KHOMDLFI_1	133860	134996	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
KHOMDLFI_1	18600	19469	pdxS	2.98e-149	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
KHOMDLFI_1	1674231	1675007	CodY	3.25e-124	nutrient-responsive regulator	81.08	100.00	ACJ80679
KHOMDLFI_1	3361766	3362335	ClpP	2.41e-98	part of proteolytic complex	81.05	97.44	BAB94595