Genome ID：GCA_004354505.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
0	29	34	44.69

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
No hit found

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
No hit found

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
No hit found

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
BOMMHMFE_61	75353	76069	STER_RS07085	0.0	Capsule	Immune modulation	100.00	100.00	WP_011681442
BOMMHMFE_61	74384	75352	STER_RS07090	0.0	Capsule	Immune modulation	100.00	100.00	WP_011681443
BOMMHMFE_61	83124	84869	STER_RS07045	0.0	Capsule	Immune modulation	99.94	100.00	WP_011681434
BOMMHMFE_61	81422	83122	STER_RS07050	0.0	Capsule	Immune modulation	99.94	100.00	WP_041827753
BOMMHMFE_61	77310	78458	STER_RS07070	0.0	Capsule	Immune modulation	99.91	100.00	WP_011681439
BOMMHMFE_61	78455	79396	STER_RS07065	0.0	Capsule	Immune modulation	99.89	100.00	WP_011681438
BOMMHMFE_61	76415	77191	STER_RS07075	0.0	Capsule	Immune modulation	99.87	100.00	WP_011681440
BOMMHMFE_61	80202	81404	STER_RS07055	0.0	Capsule	Immune modulation	99.83	100.00	WP_011681436
BOMMHMFE_61	81422	83122	STR_RS06890	0.0	Capsule	Immune modulation	99.77	100.00	WP_041827077
BOMMHMFE_61	79396	80202	STER_RS07060	0.0	Capsule	Immune modulation	99.63	100.00	WP_011681437
BOMMHMFE_61	80202	81404	STR_RS06895	0.0	Capsule	Immune modulation	99.58	100.00	WP_011227428
BOMMHMFE_37	139642	140785	cshA	0.0	Cell surface hydrophobicity proteins	Adherence	99.56	100.00	-
BOMMHMFE_4	29983	30822	cbpD	0.0	Autolysin	Exoenzyme	99.41	100.00	WP_011226733
BOMMHMFE_1	13213	14871	fbp54	0.0	FBPs	Adherence	99.40	100.00	WP_011227179
BOMMHMFE_61	73389	74366	STER_RS07095	0.0	Capsule	Immune modulation	99.39	100.00	WP_011681444
BOMMHMFE_61	78455	79396	STR_RS06905	0.0	Capsule	Immune modulation	99.36	100.00	WP_011227430
BOMMHMFE_61	77310	78458	STR_RS06910	0.0	Capsule	Immune modulation	99.30	100.00	WP_011227431
BOMMHMFE_49	2917	3510	STR_RS05880	0.0	Capsule	Immune modulation	99.16	100.00	WP_011226149
BOMMHMFE_61	79396	80202	STR_RS06900	0.0	Capsule	Immune modulation	99.13	100.00	WP_011227429
BOMMHMFE_49	3510	4379	rfbA	0.0	Capsule	Immune modulation	99.08	100.00	WP_011681286
BOMMHMFE_49	2917	3510	STER_RS06030	0.0	Capsule	Immune modulation	98.99	100.00	WP_011226149
BOMMHMFE_49	2917	3510	STU_RS15260	0.0	Capsule	Immune modulation	98.99	100.00	WP_011226149
BOMMHMFE_49	38267	39028	srtA	0.0	Sortase A	Exoenzyme	98.56	100.00	-
BOMMHMFE_61	71164	72015	rfbD	0.0	Capsule	Immune modulation	98.47	100.00	WP_014621820
BOMMHMFE_61	83124	84869	STR_RS06885	0.0	Capsule	Immune modulation	98.28	100.00	WP_011227426
BOMMHMFE_27	13696	14427	STER_RS05315	0.0	Capsule	Immune modulation	97.40	100.00	WP_011681176
BOMMHMFE_27	14428	15888	STER_RS05320	0.0	Capsule	Immune modulation	97.40	100.00	WP_011681177
BOMMHMFE_27	13696	14427	STU_RS14645	0.0	Capsule	Immune modulation	97.40	100.00	WP_011226048
BOMMHMFE_27	13696	14427	STR_RS05260	0.0	Capsule	Immune modulation	97.27	100.00	WP_011227248
BOMMHMFE_27	12995	13687	STU_RS14640	0.0	Capsule	Immune modulation	97.26	100.00	WP_011226047
BOMMHMFE_27	12995	13687	STR_RS05255	0.0	Capsule	Immune modulation	96.97	100.00	WP_011227247
BOMMHMFE_27	14428	15888	STU_RS14650	0.0	Capsule	Immune modulation	96.78	100.21	WP_011226049
BOMMHMFE_61	72134	73392	STER_RS07100	0.0	Capsule	Immune modulation	96.43	99.92	WP_011681445
BOMMHMFE_27	14428	15888	STR_RS05265	0.0	Capsule	Immune modulation	96.10	100.21	WP_041827043
BOMMHMFE_27	12245	12985	STU_RS14635	0.0	Capsule	Immune modulation	96.09	100.00	WP_011226046
BOMMHMFE_27	12245	12985	STER_RS05305	0.0	Capsule	Immune modulation	95.95	100.00	WP_011681174
BOMMHMFE_8	105343	110238	SAG_RS09105	0.0	Agglutinin receptor	Adherence	95.81	99.96	WP_000167699
BOMMHMFE_8	105343	110286	SSU98_0978	0.0	Agglutinin receptor	Adherence	95.73	99.78	YP_001200536
BOMMHMFE_8	105343	110286	SSU05_0965	0.0	Agglutinin receptor	Adherence	95.71	99.78	YP_001198331
BOMMHMFE_27	12250	12985	STR_RS05250	0.0	Capsule	Immune modulation	95.65	98.13	WP_011227246
BOMMHMFE_27	10823	12188	STER_RS05300	0.0	Capsule	Immune modulation	95.24	99.85	WP_011681173
BOMMHMFE_27	10821	12188	STU_RS14630	0.0	Capsule	Immune modulation	94.30	100.00	WP_011226045
BOMMHMFE_27	12995	13687	STER_RS05310	0.0	Capsule	Immune modulation	90.77	100.00	WP_011681175
BOMMHMFE_37	40967	42270	eno	0.0	Streptococcal enolase	Exoenzyme	87.94	99.54	WP_000022832
BOMMHMFE_46	14332	15342	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	86.74	99.41	WP_002986042
BOMMHMFE_61	79396	80202	SGO_RS05020	0.0	Capsule	Immune modulation	83.27	100.00	WP_012000440
BOMMHMFE_8	128683	129966	tig/ropA	0.0	Trigger factor	Stress survival	80.73	99.77	WP_000107753
BOMMHMFE_49	1441	2487	rfbB	0.0	Capsule	Immune modulation	80.61	100.00	WP_009659423
BOMMHMFE_27	1330	1913	SPD_RS01775	3.60e-145	Capsule	Immune modulation	82.73	96.20	WP_001819836
BOMMHMFE_61	80202	80939	SGO_RS05025	0.0	Capsule	Immune modulation	84.96	60.29	WP_012000441

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
BOMMHMFE_8	110259	105346	B9H01_RS04765	0.0	glucan-binding protein	97.19	99.70	AUS90958
BOMMHMFE_81	25657	26730	MntE	0.0	manganese homeostasis	94.97	99.72	ABF32167
BOMMHMFE_49	41715	42698	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	94.82	100.00	AAK75326
BOMMHMFE_37	124276	123308	spr0084	0.0	pathogenitcity related	93.19	98.48	AAK98888
BOMMHMFE_62	11177	8874	pfl2(Sp_0459)	0.0	formate acetyltransferase	92.32	99.22	AAK74619
BOMMHMFE_50	19733	18252	SPD_0310	0.0	UPF0371 protein SPD_0310	91.90	100.00	ABJ54480
BOMMHMFE_2	6196	8442	metE	0.0	methionine biosynthesis enzymes	91.72	100.00	AAK74738
BOMMHMFE_4	1974	976	recA	0.0	DNA recombination and repair	91.29	85.82	AAL00560
BOMMHMFE_17	15562	14591	prsA2	0.0	ribose-phosphate pyrophosphokinase	90.12	100.00	ABF36968
BOMMHMFE_61	21500	22651	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	89.32	99.74	AAL00050
BOMMHMFE_61	57665	59653	uvrB	0.0	excinuclease ABC, B subunit	89.14	100.00	AE014259_2
BOMMHMFE_49	25528	23798	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	87.87	100.00	AAK34199
BOMMHMFE_83	28069	26591	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.83	100.00	ADE32434
BOMMHMFE_37	42270	40969	Eno	0.0	enolase	85.98	99.77	ABP90468
BOMMHMFE_83	12871	10979	gidA	0.0	tRNA uridine 5-carboxymethylaminomethyl modification enzyme	85.42	98.90	ABP91129
BOMMHMFE_2	11367	9658	PGM	0.0	phosphoglucomutase	84.06	99.65	ACH87041
BOMMHMFE_44	20238	21248	pdh	0.0	pyruvate dehydrogenase	83.09	99.70	ABP91006
BOMMHMFE_1	28260	26899	mnmE	0.0	central tRNA-modifying GTPase	81.80	99.56	ABP90420
BOMMHMFE_44	70544	68652	PepO	0.0	endopeptidase	80.03	100.00	ABF32980
BOMMHMFE_37	56702	55812	bglB	1.40e-179	putative phospho--glucosidase	88.89	99.66	AAK33487
BOMMHMFE_82	57091	56153	SP_0676	1.31e-168	transcription facot	81.15	97.20	AAK74821
BOMMHMFE_2	8634	9491	metF	1.05e-166	methionine biosynthesis enzymes	86.36	99.31	AAK74739
BOMMHMFE_3	29811	30515	covR	1.29e-132	responder protein	85.53	100.00	AAK71319
BOMMHMFE_59	34792	35463	rr01	1.22e-127	response regulator	84.82	99.56	CAB54566
BOMMHMFE_2	15321	15989	CiaR	1.15e-125	two-component response regulator	87.44	99.55	AAK74935
BOMMHMFE_2	15321	15992	ciaR	1.23e-123	two component system response regulator	85.27	99.12	AIK75708
BOMMHMFE_3	29811	30515	walR	5.42e-123	DNA-binding response regulator	82.13	100.00	ANC99504
BOMMHMFE_24	7830	7144	CovR	3.93e-120	serves to repress GAS virulence factor-encoding genes	81.22	100.00	ACE75886
BOMMHMFE_4	700	305	SpxA2	6.21e-76	transcriptional regulator	90.91	100.00	ERL21461
BOMMHMFE_18	25486	25199	spr0479	1.26e-48	essential gene	84.38	98.97	AAK99283
BOMMHMFE_42	511	257	spr1327	1.69e-46	essential gene	95.29	100.00	AAL00131
BOMMHMFE_47	12973	13236	spr0175	1.38e-41	pathogenitcity related	82.95	100.00	AAK98979
BOMMHMFE_47	13800	14066	spr0177	5.78e-34	essential gene	84.27	88.12	AAK98981
BOMMHMFE_8	128525	128025	RopE (M5005_Spy_1611)	2.53e-76	probable DNA-directed RNA polymerase subunit delta	82.04	87.43	AAK34603
BOMMHMFE_62	11177	8880	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	82.29	98.08	MYN69560
BOMMHMFE_37	147072	145882	AUS90997 (B9H01_RS07385)	0.0	site-specific integrase	88.67	99.50	AUS90997
BOMMHMFE_44	56107	55088	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	96.47	100.00	ABJ55451