Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGNPBOHD_22 | 247813 | 248778 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
| GGNPBOHD_33 | 94246 | 94983 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| GGNPBOHD_12 | 69030 | 70661 | ErmF | ARO:3000498 | ErmF | 99.62 | 204.14 | M17124.1 |
| GGNPBOHD_12 | 67681 | 68817 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| GGNPBOHD_11 | 55680 | 57605 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GGNPBOHD_12 | 69030 | 69830 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| GGNPBOHD_12 | 67651 | 68817 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| GGNPBOHD_11 | 55680 | 57605 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GGNPBOHD_22 | 247813 | 248778 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| GGNPBOHD_22 | 247813 | 248778 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| GGNPBOHD_22 | 247813 | 248778 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| GGNPBOHD_22 | 247813 | 248778 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
| GGNPBOHD_33 | 94246 | 94983 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGNPBOHD_12 | 69033 | 69830 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| GGNPBOHD_12 | 67651 | 68814 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| GGNPBOHD_22 | 247813 | 248775 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| GGNPBOHD_11 | 55680 | 57602 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GGNPBOHD_33 | 94249 | 94983 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GGNPBOHD_19 | 12423 | 10843 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |