Genome ID：GCA_006227745.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
3	22	33	39.77

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
BGPFFOJI_99	1115	1975	TEM-116	ARO:3000979	TEM-116	100.00	100.00	U36911.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
BGPFFOJI_99	1115	1975	blaTEM-116	Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin	100.00	100.00	AY425988
BGPFFOJI_115	241770	242987	mef(A)	Erythromycin, Azithromycin	100.00	100.00	U83667
BGPFFOJI_115	240187	241650	msr(D)	Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	AF274302

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
BGPFFOJI_99	1118	1975	blaTEM-116	broad-spectrum class A beta-lactamase TEM-116	ALLELEX	100.00	100.00	WP_000027050.1
BGPFFOJI_115	241773	242987	mef(A)	macrolide efflux MFS transporter Mef(A)	EXACTX	100.00	100.00	WP_000417519.1
BGPFFOJI_115	240190	241650	msr(D)	ABC-F type ribosomal protection protein Msr(D)	EXACTX	100.00	100.00	WP_000420313.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
BGPFFOJI_149	72538	74322	STU_RS16230	0.0	Capsule	Immune modulation	96.19	100.00	WP_011226325
BGPFFOJI_149	78324	79472	STU_RS16255	0.0	Capsule	Immune modulation	95.91	99.91	WP_041828290
BGPFFOJI_131	195362	196822	STER_RS05320	0.0	Capsule	Immune modulation	95.41	100.00	WP_011681177
BGPFFOJI_149	84513	85364	rfbD	0.0	Capsule	Immune modulation	95.31	100.00	WP_014621820
BGPFFOJI_131	191757	193122	STER_RS05300	0.0	Capsule	Immune modulation	95.31	99.85	WP_011681173
BGPFFOJI_131	195362	196822	STU_RS14650	0.0	Capsule	Immune modulation	95.00	100.21	WP_011226049
BGPFFOJI_131	193179	193919	STER_RS05305	0.0	Capsule	Immune modulation	94.87	100.00	WP_011681174
BGPFFOJI_131	191755	193122	STU_RS14630	0.0	Capsule	Immune modulation	94.52	100.00	WP_011226045
BGPFFOJI_131	193179	193919	STU_RS14635	0.0	Capsule	Immune modulation	94.33	100.00	WP_011226046
BGPFFOJI_149	74319	75353	STU_RS16235	0.0	Capsule	Immune modulation	94.32	99.34	WP_002948022
BGPFFOJI_131	195362	196822	STR_RS05265	0.0	Capsule	Immune modulation	94.25	100.21	WP_041827043
BGPFFOJI_162	1827	3110	tig/ropA	0.0	Trigger factor	Stress survival	94.08	100.00	WP_011225339
BGPFFOJI_149	77371	78327	STU_RS16250	0.0	Capsule	Immune modulation	94.04	100.00	WP_011226328
BGPFFOJI_131	193184	193919	STR_RS05250	0.0	Capsule	Immune modulation	93.89	98.13	WP_011227246
BGPFFOJI_131	194630	195361	STER_RS05315	0.0	Capsule	Immune modulation	93.85	100.00	WP_011681176
BGPFFOJI_149	82141	83412	STU_RS16265	0.0	Capsule	Immune modulation	93.79	99.76	WP_011226331
BGPFFOJI_131	194630	195361	STU_RS14645	0.0	Capsule	Immune modulation	93.72	100.00	WP_011226048
BGPFFOJI_131	194630	195361	STR_RS05260	0.0	Capsule	Immune modulation	93.03	100.00	WP_011227248
BGPFFOJI_149	75373	76578	STU_RS16240	0.0	Capsule	Immune modulation	92.79	100.00	WP_011226326
BGPFFOJI_149	76578	77387	STU_RS16245	0.0	Capsule	Immune modulation	92.72	99.88	WP_002948020
BGPFFOJI_115	81976	82569	STR_RS05880	0.0	Capsule	Immune modulation	91.92	100.00	WP_011226149
BGPFFOJI_115	81976	82569	STER_RS06030	0.0	Capsule	Immune modulation	91.75	100.00	WP_011226149
BGPFFOJI_115	81976	82569	STU_RS15260	0.0	Capsule	Immune modulation	91.75	100.00	WP_011226149
BGPFFOJI_115	82569	83438	rfbA	0.0	Capsule	Immune modulation	91.03	100.00	WP_011681286
BGPFFOJI_131	86681	88339	fbp54	0.0	FBPs	Adherence	90.36	99.94	WP_011227179
BGPFFOJI_123	210544	211449	cbpD	0.0	Autolysin	Exoenzyme	88.63	93.50	WP_082302295
BGPFFOJI_105	14888	15898	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	88.45	99.80	WP_002986042
BGPFFOJI_131	193929	194621	STR_RS05255	0.0	Capsule	Immune modulation	88.33	99.86	WP_011227247
BGPFFOJI_131	193929	194621	STU_RS14640	0.0	Capsule	Immune modulation	88.33	99.86	WP_011226047
BGPFFOJI_123	23178	24481	eno	0.0	Streptococcal enolase	Exoenzyme	88.24	99.54	WP_000022832
BGPFFOJI_131	193929	194621	STER_RS05310	0.0	Capsule	Immune modulation	87.61	99.86	WP_011681175
BGPFFOJI_91	214827	215588	srtA	0.0	Sortase A	Exoenzyme	84.01	99.87	-
BGPFFOJI_115	80727	81773	rfbB	0.0	Capsule	Immune modulation	80.42	100.00	WP_009659423

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
BGPFFOJI_91	212138	211164	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	96.31	99.09	AAK75326
BGPFFOJI_91	223721	224794	MntE	0.0	manganese homeostasis	95.53	99.72	ABF32167
BGPFFOJI_105	138253	135947	pfl2(Sp_0459)	0.0	formate acetyltransferase	94.41	99.22	AAK74619
BGPFFOJI_91	80080	78599	SPD_0310	0.0	UPF0371 protein SPD_0310	93.12	100.00	ABJ54480
BGPFFOJI_91	251777	254023	metE	0.0	methionine biosynthesis enzymes	92.92	100.00	AAK74738
BGPFFOJI_123	113881	112913	spr0084	0.0	pathogenitcity related	92.88	98.48	AAK98888
BGPFFOJI_41	3535	4506	prsA2	0.0	ribose-phosphate pyrophosphokinase	91.67	100.00	ABF36968
BGPFFOJI_115	108821	107091	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	89.95	100.00	AAK34199
BGPFFOJI_149	99552	97564	uvrB	0.0	excinuclease ABC, B subunit	89.59	100.00	AE014259_2
BGPFFOJI_149	128229	127078	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	89.58	99.74	AAL00050
BGPFFOJI_140	25867	27345	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.63	100.00	ADE32434
BGPFFOJI_123	24481	23180	Eno	0.0	enolase	86.44	99.77	ABP90468
BGPFFOJI_140	41191	43083	gidA	0.0	tRNA uridine 5-carboxymethylaminomethyl modification enzyme	85.42	98.90	ABP91129
BGPFFOJI_91	256944	255235	PGM	0.0	phosphoglucomutase	84.76	99.65	ACH87041
BGPFFOJI_41	38367	39458	recA	0.0	DNA recombination and repair	84.64	95.36	AAL00560
BGPFFOJI_140	160901	159891	pdh	0.0	pyruvate dehydrogenase	83.09	99.70	ABP91006
BGPFFOJI_131	101864	100503	mnmE	0.0	central tRNA-modifying GTPase	82.46	99.56	ABP90420
BGPFFOJI_123	38898	38008	bglB	1.78e-178	putative phospho--glucosidase	88.22	99.66	AAK33487
BGPFFOJI_91	254213	255070	metF	4.24e-170	methionine biosynthesis enzymes	88.11	99.31	AAK74739
BGPFFOJI_131	13143	12193	SP_0676	4.34e-170	transcription facot	81.39	98.45	AAK74821
BGPFFOJI_52	2569	3273	covR	1.65e-127	responder protein	85.53	100.00	AAK71319
BGPFFOJI_91	144447	145118	rr01	5.41e-127	response regulator	84.82	99.56	CAB54566
BGPFFOJI_91	260911	261582	ciaR	2.71e-125	two component system response regulator	86.16	99.12	AIK75708
BGPFFOJI_91	260911	261579	CiaR	5.02e-125	two-component response regulator	87.44	99.55	AAK74935
BGPFFOJI_52	2569	3273	walR	3.75e-121	DNA-binding response regulator	82.13	100.00	ANC99504
BGPFFOJI_157	55378	54692	CovR	2.42e-120	serves to repress GAS virulence factor-encoding genes	81.66	100.00	ACE75886
BGPFFOJI_41	39632	40027	SpxA2	3.96e-76	transcriptional regulator	91.67	100.00	ERL21461
BGPFFOJI_131	113329	113730	SpxA1	4.27e-70	transcriptional regulator	82.84	100.00	ERL19273
BGPFFOJI_5	6191	5778	GrpE	4.76e-68	protein grpE	81.88	80.59	ABP89267
BGPFFOJI_157	32159	31872	spr0479	2.93e-48	essential gene	85.42	98.97	AAK99283
BGPFFOJI_123	156070	155816	spr1327	9.96e-45	essential gene	92.94	100.00	AAL00131
BGPFFOJI_140	72183	71920	spr0175	3.34e-43	pathogenitcity related	85.23	100.00	AAK98979
BGPFFOJI_140	71357	71091	spr0177	1.37e-41	essential gene	83.15	88.12	AAK98981
BGPFFOJI_162	3277	3768	RopE (M5005_Spy_1611)	4.56e-73	probable DNA-directed RNA polymerase subunit delta	82.93	85.86	AAK34603
BGPFFOJI_105	138253	135953	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	83.22	98.08	MYN69560
BGPFFOJI_140	124191	125210	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	97.35	100.00	ABJ55451