Genome ID:GCA_008017565.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBABFBKG_11 | 27839 | 28885 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HBABFBKG_11 | 27842 | 28885 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| HBABFBKG_10 | 444384 | 445760 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.36 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBABFBKG_11 | 27842 | 28885 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| HBABFBKG_10 | 444390 | 445760 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 87.09 | 99.78 | WP_003242953.1 |
| HBABFBKG_11 | 30636 | 31154 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| HBABFBKG_8 | 1074089 | 1076686 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| HBABFBKG_9 | 376584 | 377765 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| HBABFBKG_9 | 377780 | 378229 | capC | 3.90e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HBABFBKG_15 | 31773 | 32909 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| HBABFBKG_3 | 4574 | 5443 | pdxS | 6.52e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| HBABFBKG_8 | 702724 | 703500 | CodY | 1.02e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| HBABFBKG_8 | 260544 | 260936 | spxA1 | 1.61e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| HBABFBKG_11 | 45387 | 45190 | CspA | 5.55e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| HBABFBKG_10 | 104902 | 105096 | CspD | 1.63e-27 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| HBABFBKG_10 | 104902 | 105099 | CspB | 3.38e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| HBABFBKG_11 | 45387 | 45193 | CspR | 2.75e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |