Genome ID:GCA_008245105.1 PPRS_table
 

Potential risk score of uploaded strain

ARGs VFs PGs PPRS
3245.39

CARD

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
CHECDLDK_1520867521958clbAARO:3002814clbA99.71104.01CP006845.1

Resfinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
CHECDLDK_1520923521958cfr(B)Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin88.7198.67KR610408
CHECDLDK_125642732565648tet(L)Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline86.8699.93X08034

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
CHECDLDK_1520924521958clbA23S rRNA (adenine(2503)-C(8))-methyltransferase ClbABLASTX99.7198.85WP_012116915.1
CHECDLDK_125642732565298tet(L)tetracycline efflux MFS transporter Tet(L)PARTIALX89.4774.67WP_003242953.1

Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
CHECDLDK_115544051555586capB0.0CapsuleImmune modulation82.0699.58NP_391471
CHECDLDK_115556011556050capC6.92e-112CapsuleImmune modulation83.3799.78NP_391470

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
CHECDLDK_1937940936804tufA0.0elongation factor Tu86.8195.69AHM69299
CHECDLDK_110526691051800pdxS3.36e-150encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS84.8398.31ACE61268
CHECDLDK_134710553470294CodY1.93e-122nutrient-responsive regulator81.5098.07ACJ80679
CHECDLDK_119172111918008lipA (SAUSA300_0829)1.72e-146lipoic acid synthetase80.0887.21ABD22039