Genome ID:GCA_008245105.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 4 | 5.39 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHECDLDK_1 | 520867 | 521958 | clbA | ARO:3002814 | clbA | 99.71 | 104.01 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CHECDLDK_1 | 520923 | 521958 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.71 | 98.67 | KR610408 |
| CHECDLDK_1 | 2564273 | 2565648 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 86.86 | 99.93 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHECDLDK_1 | 520924 | 521958 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 98.85 | WP_012116915.1 |
| CHECDLDK_1 | 2564273 | 2565298 | tet(L) | tetracycline efflux MFS transporter Tet(L) | PARTIALX | 89.47 | 74.67 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CHECDLDK_1 | 1554405 | 1555586 | capB | 0.0 | Capsule | Immune modulation | 82.06 | 99.58 | NP_391471 |
| CHECDLDK_1 | 1555601 | 1556050 | capC | 6.92e-112 | Capsule | Immune modulation | 83.37 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CHECDLDK_1 | 937940 | 936804 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| CHECDLDK_1 | 1052669 | 1051800 | pdxS | 3.36e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| CHECDLDK_1 | 3471055 | 3470294 | CodY | 1.93e-122 | nutrient-responsive regulator | 81.50 | 98.07 | ACJ80679 |
| CHECDLDK_1 | 1917211 | 1918008 | lipA (SAUSA300_0829) | 1.72e-146 | lipoic acid synthetase | 80.08 | 87.21 | ABD22039 |