Genome ID:GCA_008571735.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 16 | 0 | 1 | 16.03 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HKDPPBBJ_425 | 367321 | 368526 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| HKDPPBBJ_445 | 7037 | 8962 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| HKDPPBBJ_479 | 4433 | 5257 | OXA-347 | ARO:3001777 | OXA-347 | 99.64 | 100.00 | JN086160.1 |
| HKDPPBBJ_19 | 2835 | 3710 | EreD | ARO:3004608 | EreD | 93.47 | 71.32 | KP265721.1 |
| HKDPPBBJ_19 | 1771 | 2634 | aadS | ARO:3004683 | aadS | 100.00 | 115.68 | M72415.1 |
| HKDPPBBJ_388 | 1083 | 3008 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| HKDPPBBJ_479 | 711 | 1877 | tet(X) | ARO:3000205 | tet(X) | 99.48 | 100.00 | M37699.1 |
| HKDPPBBJ_138 | 322 | 1287 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
| HKDPPBBJ_414 | 135 | 950 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| HKDPPBBJ_388 | 2 | 796 | ErmF | ARO:3000498 | ErmF | 98.48 | 99.25 | M17124.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HKDPPBBJ_221 | 52242 | 53108 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| HKDPPBBJ_414 | 135 | 950 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| HKDPPBBJ_138 | 322 | 1287 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| HKDPPBBJ_479 | 4433 | 5257 | blaOXA-347 | Unknown Beta-lactam | 99.88 | 100.00 | ACWG01000053 |
| HKDPPBBJ_490 | 316 | 1125 | aph(3')-Ib | Neomycin, Kanamycin, Lividomycin, Paromomycin, Ribostamycin, Kanamycin | 99.88 | 99.26 | AJ744860 |
| HKDPPBBJ_445 | 7037 | 8962 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| HKDPPBBJ_479 | 711 | 1877 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| HKDPPBBJ_388 | 1 | 796 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 99.38 | M17808 |
| HKDPPBBJ_19 | 2835 | 3710 | ere(D) | Erythromycin | 95.09 | 71.39 | KP265721 |
| HKDPPBBJ_79 | 1350 | 2567 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HKDPPBBJ_221 | 53262 | 54035 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| HKDPPBBJ_221 | 52245 | 53108 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| HKDPPBBJ_19 | 1771 | 2631 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| HKDPPBBJ_425 | 368551 | 369060 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| HKDPPBBJ_414 | 135 | 947 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| HKDPPBBJ_479 | 711 | 1874 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| HKDPPBBJ_138 | 322 | 1284 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| HKDPPBBJ_479 | 4433 | 5254 | blaOXA | class D beta-lactamase | BLASTX | 99.64 | 100.00 | WP_004295324.1 |
| HKDPPBBJ_490 | 319 | 1125 | aph(3')-Ib | aminoglycoside O-phosphotransferase APH(3')-Ib | BLASTX | 99.63 | 99.26 | WP_011205810.1 |
| HKDPPBBJ_445 | 7037 | 8959 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HKDPPBBJ_425 | 367321 | 368523 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| HKDPPBBJ_388 | 2 | 793 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.86 | 99.25 | WP_002682030.1 |
| HKDPPBBJ_221 | 258 | 1097 | estT | macrolide hydrolase EstT | BLASTX | 98.58 | 100.00 | WP_185148407.1 |
| HKDPPBBJ_79 | 1347 | 2567 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| HKDPPBBJ_19 | 2838 | 3710 | ere(D) | EreD family erythromycin esterase | PARTIAL_CONTIG_ENDX | 93.47 | 71.32 | WP_015345560.1 |
| HKDPPBBJ_388 | 1083 | 3005 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HKDPPBBJ_122 | 30240 | 28660 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |