Genome ID:GCA_008672425.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NODIPJOO_1 | 9706 | 10443 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| NODIPJOO_115 | 2796 | 4016 | tet(40) | ARO:3000567 | tet(40) | 98.52 | 100.00 | AM419751.1 |
| NODIPJOO_115 | 826 | 2745 | tet(O) | ARO:3000190 | tet(O) | 99.22 | 100.00 | M18896.2 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NODIPJOO_115 | 2796 | 4016 | tet(40) | Doxycycline, Tetracycline | 99.92 | 100.00 | FJ158002 |
| NODIPJOO_115 | 826 | 2745 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.74 | 100.00 | M18896 |
| NODIPJOO_1 | 9706 | 10443 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 100.00 | JN899585 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NODIPJOO_115 | 2796 | 4013 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.75 | 100.00 | WP_009247026.1 |
| NODIPJOO_115 | 826 | 2742 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.69 | 100.00 | WP_012669445.1 |
| NODIPJOO_1 | 9709 | 10443 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_001038795.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||