Genome ID:GCA_009662275.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 14 | 10 | 4 | 17.66 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GDGJMGLJ_1 | 2673287 | 2674141 | aadK | ARO:3002627 | aadK | 98.94 | 100.00 | AL009126.1 |
| GDGJMGLJ_1 | 2654584 | 2655786 | blt | ARO:3003006 | blt | 99.50 | 100.00 | L32599.1 |
| GDGJMGLJ_1 | 2428157 | 2429326 | bmr | ARO:3003007 | bmr | 99.23 | 100.00 | M33768.1 |
| GDGJMGLJ_1 | 1456789 | 1457106 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| GDGJMGLJ_1 | 1456451 | 1456789 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| GDGJMGLJ_1 | 960551 | 963121 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| GDGJMGLJ_1 | 649710 | 651353 | vmlR | ARO:3004476 | vmlR | 98.54 | 100.00 | NC_000964.3 |
| GDGJMGLJ_1 | 394393 | 394986 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| GDGJMGLJ_1 | 382788 | 383438 | Streptococcus suis chloramphenicol acetyltransferase | ARO:3004455 | Ssui_ACT_CHL | 94.91 | 100.00 | AB080798.1 |
| GDGJMGLJ_1 | 341486 | 342919 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.00 | JYFL01000006.1 |
| GDGJMGLJ_1 | 328669 | 329589 | mphK | ARO:3004541 | mphK | 99.02 | 100.00 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GDGJMGLJ_1 | 382788 | 383438 | cat(pC194) | Chloramphenicol | 100.00 | 100.00 | NC_002013 |
| GDGJMGLJ_1 | 2673287 | 2674141 | aadK | Streptomycin | 99.30 | 100.00 | M26879 |
| GDGJMGLJ_1 | 4135254 | 4136630 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 98.77 | 100.00 | D12567 |
| GDGJMGLJ_1 | 328669 | 329589 | mph(K) | Spiramycin, Telithromycin | 98.05 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GDGJMGLJ_1 | 382788 | 383435 | catA | type A-9 chloramphenicol O-acetyltransferase | EXACTX | 100.00 | 100.00 | WP_001010387.1 |
| GDGJMGLJ_1 | 328669 | 329586 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.02 | 100.00 | WP_003246254.1 |
| GDGJMGLJ_1 | 2673290 | 2674141 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.94 | 100.00 | WP_003229862.1 |
| GDGJMGLJ_1 | 4135257 | 4136630 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_063856081.1 |
| GDGJMGLJ_1 | 649713 | 651353 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.54 | 100.00 | WP_003234144.1 |
| GDGJMGLJ_1 | 4132733 | 4133251 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| GDGJMGLJ_1 | 2124439 | 2127036 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.40 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GDGJMGLJ_1 | 2228997 | 2229638 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 100.00 | 100.00 | NP_390062 |
| GDGJMGLJ_1 | 3652305 | 3653486 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| GDGJMGLJ_1 | 3227092 | 3234228 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.54 | 100.00 | NP_391076 |
| GDGJMGLJ_1 | 3650680 | 3651822 | capA | 0.0 | Capsule | Immune modulation | 99.39 | 100.00 | NP_391469 |
| GDGJMGLJ_1 | 3238084 | 3238869 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| GDGJMGLJ_1 | 3651841 | 3652290 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| GDGJMGLJ_1 | 3234248 | 3235186 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.25 | 100.00 | NP_391077 |
| GDGJMGLJ_1 | 3236862 | 3238058 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.17 | 100.00 | NP_391079 |
| GDGJMGLJ_1 | 2074358 | 2076121 | dep/capD | 0.0 | Capsule | Immune modulation | 99.15 | 100.00 | NP_389723 |
| GDGJMGLJ_1 | 3235214 | 3236833 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.07 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GDGJMGLJ_1 | 132400 | 133536 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| GDGJMGLJ_1 | 18665 | 19534 | pdxS | 3.09e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| GDGJMGLJ_1 | 1766597 | 1767373 | CodY | 3.38e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| GDGJMGLJ_1 | 3490945 | 3491514 | ClpP | 2.51e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |