Genome ID:GCA_009662375.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 4 | 16.88 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLINLMMP_1 | 2595879 | 2596733 | aadK | ARO:3002627 | aadK | 97.54 | 100.00 | AL009126.1 |
| GLINLMMP_1 | 2576687 | 2577889 | blt | ARO:3003006 | blt | 99.75 | 100.00 | L32599.1 |
| GLINLMMP_1 | 2347984 | 2349153 | bmr | ARO:3003007 | bmr | 99.23 | 100.00 | M33768.1 |
| GLINLMMP_1 | 1348282 | 1348599 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| GLINLMMP_1 | 1347944 | 1348282 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| GLINLMMP_1 | 885012 | 887582 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| GLINLMMP_1 | 592719 | 594362 | vmlR | ARO:3004476 | vmlR | 98.90 | 100.00 | NC_000964.3 |
| GLINLMMP_1 | 337396 | 337989 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| GLINLMMP_1 | 286835 | 288268 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.00 | JYFL01000006.1 |
| GLINLMMP_1 | 274018 | 274938 | mphK | ARO:3004541 | mphK | 99.02 | 100.00 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GLINLMMP_1 | 4056457 | 4057833 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 98.77 | 100.00 | D12567 |
| GLINLMMP_1 | 2595881 | 2596733 | aadK | Streptomycin | 98.12 | 99.77 | M26879 |
| GLINLMMP_1 | 274018 | 274938 | mph(K) | Spiramycin, Telithromycin | 98.05 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLINLMMP_1 | 274018 | 274935 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.02 | 100.00 | WP_003246254.1 |
| GLINLMMP_1 | 592722 | 594362 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.90 | 100.00 | WP_003234144.1 |
| GLINLMMP_1 | 4056460 | 4057833 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_063856081.1 |
| GLINLMMP_1 | 2595882 | 2596733 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.54 | 100.00 | WP_003229862.1 |
| GLINLMMP_1 | 4053936 | 4054454 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| GLINLMMP_1 | 2042454 | 2045051 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.40 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GLINLMMP_1 | 2148824 | 2149465 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 100.00 | 100.00 | NP_390062 |
| GLINLMMP_1 | 3575003 | 3576184 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| GLINLMMP_1 | 3573378 | 3574520 | capA | 0.0 | Capsule | Immune modulation | 99.39 | 100.00 | NP_391469 |
| GLINLMMP_1 | 3160641 | 3161426 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| GLINLMMP_1 | 3574539 | 3574988 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| GLINLMMP_1 | 3159419 | 3160615 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.17 | 100.00 | NP_391079 |
| GLINLMMP_1 | 1992373 | 1994136 | dep/capD | 0.0 | Capsule | Immune modulation | 99.15 | 100.00 | NP_389723 |
| GLINLMMP_1 | 3157771 | 3159390 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.70 | 100.00 | NP_391078 |
| GLINLMMP_1 | 3156805 | 3157743 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.40 | 100.00 | NP_391077 |
| GLINLMMP_1 | 3149649 | 3156785 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.40 | 100.00 | NP_391076 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GLINLMMP_1 | 132403 | 133539 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| GLINLMMP_1 | 18665 | 19534 | pdxS | 3.04e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| GLINLMMP_1 | 1658082 | 1658858 | CodY | 3.32e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| GLINLMMP_1 | 3413643 | 3414212 | ClpP | 2.46e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |