Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 2 | 4.47 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DMIHELNL_111 | 401549 | 403523 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| DMIHELNL_204 | 197066 | 197866 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| DMIHELNL_47 | 177 | 374 | rsmA | ARO:3005069 | rsmA | 90.91 | 106.56 | AF061757.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DMIHELNL_111 | 401597 | 403522 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| DMIHELNL_204 | 197066 | 197866 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| DMIHELNL_99 | 125052 | 126002 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| DMIHELNL_99 | 125052 | 126002 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| DMIHELNL_99 | 125052 | 126002 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| DMIHELNL_99 | 125052 | 126002 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DMIHELNL_111 | 401597 | 403519 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| DMIHELNL_204 | 197066 | 197863 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| DMIHELNL_99 | 125051 | 126004 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DMIHELNL_11 | 62991 | 61411 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
| DMIHELNL_47 | 177 | 371 | CsrA | 5.33e-36 | small RNA-binding protein involved in the regulation of a wide range of cellular processes. | 96.92 | 100.00 | AAF93716 |
| DMIHELNL_47 | 177 | 347 | csrA | 1.23e-29 | post-transcriptional regulator | 94.74 | 93.44 | AAA71919 |
| DMIHELNL_47 | 177 | 371 | RsmA | 5.79e-29 | carbon storage regulator homolog | 84.61 | 104.92 | AAA74502 |