Genome ID：GCA_009717365.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
3	16	34	37.70

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
IJMKIBFA_33	39119	40597	lsaC	ARO:3003112	lsaC	99.39	100.00	HM990671.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
IJMKIBFA_42	108989	110206	mef(A)	Erythromycin, Azithromycin	99.92	100.00	HG423652
IJMKIBFA_33	39119	40597	lsa(C)	Lincomycin, Clindamycin, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin	99.80	100.00	HM990671
IJMKIBFA_42	110332	111795	msr(D)	Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	98.50	100.00	AF227520

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
IJMKIBFA_33	39122	40597	lsa(C)	ABC-F type ribosomal protection protein Lsa(C)	BLASTX	99.39	100.00	WP_063851347.1
IJMKIBFA_42	108989	110203	mef(A)	macrolide efflux MFS transporter Mef(A)	BLASTX	98.02	100.00	WP_063853563.1
IJMKIBFA_42	110332	111792	msr(D)	ABC-F type ribosomal protection protein Msr(D)	BLASTX	97.74	100.00	WP_000420317.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
IJMKIBFA_3	7880	9340	STER_RS05320	0.0	Capsule	Immune modulation	97.06	100.00	WP_011681177
IJMKIBFA_3	7880	9340	STU_RS14650	0.0	Capsule	Immune modulation	96.58	100.21	WP_011226049
IJMKIBFA_3	7880	9340	STR_RS05265	0.0	Capsule	Immune modulation	96.03	100.21	WP_041827043
IJMKIBFA_3	11580	12945	STER_RS05300	0.0	Capsule	Immune modulation	94.73	99.85	WP_011681173
IJMKIBFA_3	11580	12947	STU_RS14630	0.0	Capsule	Immune modulation	94.08	100.00	WP_011226045
IJMKIBFA_3	10783	11523	STER_RS05305	0.0	Capsule	Immune modulation	94.06	100.00	WP_011681174
IJMKIBFA_3	9341	10072	STER_RS05315	0.0	Capsule	Immune modulation	93.99	100.00	WP_011681176
IJMKIBFA_3	9341	10072	STU_RS14645	0.0	Capsule	Immune modulation	93.85	100.00	WP_011226048
IJMKIBFA_3	9341	10072	STR_RS05260	0.0	Capsule	Immune modulation	93.17	100.00	WP_011227248
IJMKIBFA_3	10783	11523	STU_RS14635	0.0	Capsule	Immune modulation	93.12	100.00	WP_011226046
IJMKIBFA_11	96939	97789	rfbD	0.0	Capsule	Immune modulation	92.95	99.88	WP_014621820
IJMKIBFA_3	10783	11518	STR_RS05250	0.0	Capsule	Immune modulation	92.80	98.13	WP_011227246
IJMKIBFA_45	79069	79662	STR_RS05880	0.0	Capsule	Immune modulation	90.74	100.00	WP_011226149
IJMKIBFA_45	79662	80531	rfbA	0.0	Capsule	Immune modulation	90.58	100.00	WP_011681286
IJMKIBFA_45	79069	79662	STER_RS06030	0.0	Capsule	Immune modulation	90.57	100.00	WP_011226149
IJMKIBFA_45	79069	79662	STU_RS15260	0.0	Capsule	Immune modulation	90.57	100.00	WP_011226149
IJMKIBFA_6	26523	28181	fbp54	0.0	FBPs	Adherence	89.94	99.94	WP_011227179
IJMKIBFA_17	131	1141	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	88.55	99.80	WP_002986042
IJMKIBFA_3	10081	10773	STR_RS05255	0.0	Capsule	Immune modulation	88.33	99.86	WP_011227247
IJMKIBFA_3	10081	10773	STU_RS14640	0.0	Capsule	Immune modulation	88.33	99.86	WP_011226047
IJMKIBFA_13	22010	22849	cbpD	0.0	Autolysin	Exoenzyme	87.99	99.88	WP_011226733
IJMKIBFA_3	10081	10773	STER_RS05310	0.0	Capsule	Immune modulation	87.46	99.86	WP_011681175
IJMKIBFA_42	87630	88933	eno	0.0	Streptococcal enolase	Exoenzyme	87.33	99.54	WP_000022832
IJMKIBFA_9	4500	5261	srtA	0.0	Sortase A	Exoenzyme	85.06	99.87	-
IJMKIBFA_26	2667	3950	tig/ropA	0.0	Trigger factor	Stress survival	81.07	99.61	WP_000107753
IJMKIBFA_45	77755	78801	rfbB	0.0	Capsule	Immune modulation	80.52	100.00	WP_009659423
IJMKIBFA_3	21000	21583	SPD_RS01775	3.73e-158	Capsule	Immune modulation	84.10	96.20	WP_001819836

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
IJMKIBFA_9	1811	828	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	96.65	100.00	AAK75326
IJMKIBFA_9	13400	14473	MntE	0.0	manganese homeostasis	95.25	99.72	ABF32167
IJMKIBFA_11	275447	277753	pfl2(Sp_0459)	0.0	formate acetyltransferase	94.15	99.22	AAK74619
IJMKIBFA_22	108924	110405	SPD_0310	0.0	UPF0371 protein SPD_0310	93.12	100.00	ABJ54480
IJMKIBFA_9	32466	34712	metE	0.0	methionine biosynthesis enzymes	92.12	100.00	AAK74738
IJMKIBFA_25	2049	1081	spr0084	0.0	pathogenitcity related	91.95	98.48	AAK98888
IJMKIBFA_18	234	1205	prsA2	0.0	ribose-phosphate pyrophosphokinase	91.67	100.00	ABF36968
IJMKIBFA_19	3500	1770	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	89.78	100.00	AAK34199
IJMKIBFA_11	139950	138799	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	89.58	99.74	AAL00050
IJMKIBFA_11	111229	109241	uvrB	0.0	excinuclease ABC, B subunit	89.29	100.00	AE014259_2
IJMKIBFA_33	135520	134042	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.83	100.00	ADE32434
IJMKIBFA_42	87630	88931	Eno	0.0	enolase	86.21	99.77	ABP90468
IJMKIBFA_33	120188	118296	gidA	0.0	tRNA uridine 5-carboxymethylaminomethyl modification enzyme	85.26	98.90	ABP91129
IJMKIBFA_2	65354	67063	PGM	0.0	phosphoglucomutase	85.11	99.65	ACH87041
IJMKIBFA_13	2043	952	recA	0.0	DNA recombination and repair	84.64	95.36	AAL00560
IJMKIBFA_8	28492	29502	pdh	0.0	pyruvate dehydrogenase	83.09	99.70	ABP91006
IJMKIBFA_6	53008	51647	mnmE	0.0	central tRNA-modifying GTPase	82.67	99.56	ABP90420
IJMKIBFA_42	73223	74113	bglB	1.83e-178	putative phospho--glucosidase	87.88	99.66	AAK33487
IJMKIBFA_2	26107	27057	SP_0676	1.99e-170	transcription facot	81.39	98.45	AAK74821
IJMKIBFA_9	34899	35756	metF	6.86e-169	methionine biosynthesis enzymes	87.41	99.31	AAK74739
IJMKIBFA_11	97789	96950	GacA	4.68e-150	dTDP-4-dehydrorhamnose reductas	80.00	98.59	AAZ51220
IJMKIBFA_47	47930	48634	covR	3.30e-127	responder protein	85.53	100.00	AAK71319
IJMKIBFA_22	60528	59857	rr01	3.47e-127	response regulator	84.82	99.56	CAB54566
IJMKIBFA_2	61385	60714	ciaR	2.99e-125	two component system response regulator	85.71	99.12	AIK75708
IJMKIBFA_2	61385	60717	CiaR	3.72e-125	two-component response regulator	87.00	99.55	AAK74935
IJMKIBFA_47	47930	48634	walR	7.50e-121	DNA-binding response regulator	82.13	100.00	ANC99504
IJMKIBFA_44	49214	48528	CovR	2.48e-120	serves to repress GAS virulence factor-encoding genes	81.66	100.00	ACE75886
IJMKIBFA_13	776	381	SpxA2	2.25e-76	transcriptional regulator	91.67	100.00	ERL21461
IJMKIBFA_12	24664	24263	SpxA1	3.42e-70	transcriptional regulator	82.09	100.00	ERL19273
IJMKIBFA_5	55490	55903	GrpE	9.74e-68	protein grpE	81.16	80.59	ABP89267
IJMKIBFA_44	26009	25722	spr0479	3.01e-48	essential gene	85.42	98.97	AAK99283
IJMKIBFA_1	30188	30442	spr1327	3.12e-45	essential gene	92.94	100.00	AAL00131
IJMKIBFA_33	89029	89292	spr0175	8.34e-43	pathogenitcity related	85.23	100.00	AAK98979
IJMKIBFA_33	89855	90121	spr0177	1.16e-41	essential gene	83.15	88.12	AAK98981
IJMKIBFA_26	2500	2009	RopE (M5005_Spy_1611)	3.72e-74	probable DNA-directed RNA polymerase subunit delta	82.93	85.86	AAK34603
IJMKIBFA_11	275447	277747	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	82.83	98.08	MYN69560
IJMKIBFA_33	1852	833	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	97.35	100.00	ABJ55451