Genome ID：GCA_009717475.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
2	19	33	38.13

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
No hit found

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
JJPAMAED_11	221442	222905	msr(D)	Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	AF274302
JJPAMAED_11	223025	224242	mef(A)	Erythromycin, Azithromycin	99.92	100.00	U83667

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
JJPAMAED_11	223028	224242	mef(A)	macrolide efflux MFS transporter Mef(A)	EXACTX	100.00	100.00	WP_000417519.1
JJPAMAED_11	221445	222905	msr(D)	ABC-F type ribosomal protection protein Msr(D)	EXACTX	100.00	100.00	WP_000420313.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
JJPAMAED_30	147401	148369	STER_RS07090	0.0	Capsule	Immune modulation	98.14	100.00	WP_011681443
JJPAMAED_30	148371	149086	STER_RS07085	0.0	Capsule	Immune modulation	96.79	99.86	WP_011681442
JJPAMAED_30	145180	146433	STER_RS07100	0.0	Capsule	Immune modulation	96.49	99.52	WP_011681445
JJPAMAED_30	144210	145061	rfbD	0.0	Capsule	Immune modulation	94.25	100.00	WP_014621820
JJPAMAED_22	176705	178165	STU_RS14650	0.0	Capsule	Immune modulation	93.98	100.14	WP_011226049
JJPAMAED_22	176705	178165	STER_RS05320	0.0	Capsule	Immune modulation	93.98	100.00	WP_011681177
JJPAMAED_22	173097	174464	STU_RS14630	0.0	Capsule	Immune modulation	93.20	100.00	WP_011226045
JJPAMAED_11	80572	81165	STR_RS05880	0.0	Capsule	Immune modulation	93.10	100.00	WP_011226149
JJPAMAED_22	176705	178165	STR_RS05265	0.0	Capsule	Immune modulation	93.09	100.14	WP_041827043
JJPAMAED_22	173099	174464	STER_RS05300	0.0	Capsule	Immune modulation	93.05	99.85	WP_011681173
JJPAMAED_30	149432	150201	STER_RS07075	0.0	Capsule	Immune modulation	93.00	98.97	WP_011681440
JJPAMAED_11	80572	81165	STER_RS06030	0.0	Capsule	Immune modulation	92.93	100.00	WP_011226149
JJPAMAED_11	80572	81165	STU_RS15260	0.0	Capsule	Immune modulation	92.93	100.00	WP_011226149
JJPAMAED_22	175973	176704	STU_RS14645	0.0	Capsule	Immune modulation	91.94	100.00	WP_011226048
JJPAMAED_22	175973	176704	STER_RS05315	0.0	Capsule	Immune modulation	91.53	100.00	WP_011681176
JJPAMAED_22	174522	175262	STER_RS05305	0.0	Capsule	Immune modulation	91.51	99.87	WP_011681174
JJPAMAED_11	81165	82034	rfbA	0.0	Capsule	Immune modulation	91.49	100.00	WP_011681286
JJPAMAED_22	175973	176704	STR_RS05260	0.0	Capsule	Immune modulation	90.98	100.00	WP_011227248
JJPAMAED_22	72039	73697	fbp54	0.0	FBPs	Adherence	90.60	99.94	WP_011227179
JJPAMAED_22	174522	175262	STU_RS14635	0.0	Capsule	Immune modulation	90.57	99.87	WP_011226046
JJPAMAED_22	174527	175262	STR_RS05250	0.0	Capsule	Immune modulation	90.23	98.00	WP_011227246
JJPAMAED_11	286973	288276	eno	0.0	Streptococcal enolase	Exoenzyme	88.24	99.54	WP_000022832
JJPAMAED_11	416208	417101	cbpD	0.0	Autolysin	Exoenzyme	88.08	93.40	WP_082302295
JJPAMAED_34	14391	15401	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	87.56	99.80	WP_002986042
JJPAMAED_36	84786	85547	srtA	0.0	Sortase A	Exoenzyme	86.52	99.74	-
JJPAMAED_22	175272	175964	STU_RS14640	0.0	Capsule	Immune modulation	85.45	99.86	WP_011226047
JJPAMAED_22	175272	175964	STR_RS05255	0.0	Capsule	Immune modulation	85.16	99.86	WP_011227247
JJPAMAED_22	175272	175964	STER_RS05310	0.0	Capsule	Immune modulation	84.87	99.86	WP_011681175
JJPAMAED_31	2693	3976	tig/ropA	0.0	Trigger factor	Stress survival	81.07	99.61	WP_000107753
JJPAMAED_11	79261	80307	rfbB	0.0	Capsule	Immune modulation	80.71	100.00	WP_009659423

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
JJPAMAED_36	76655	75582	MntE	0.0	manganese homeostasis	96.09	99.72	ABF32167
JJPAMAED_36	88236	89210	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	96.00	99.09	AAK75326
JJPAMAED_1	55465	57771	pfl2(Sp_0459)	0.0	formate acetyltransferase	94.41	99.22	AAK74619
JJPAMAED_32	132740	134221	SPD_0310	0.0	UPF0371 protein SPD_0310	93.12	100.00	ABJ54480
JJPAMAED_36	57558	55312	metE	0.0	methionine biosynthesis enzymes	93.06	100.00	AAK74738
JJPAMAED_11	378045	377077	spr0084	0.0	pathogenitcity related	92.88	98.48	AAK98888
JJPAMAED_3	38691	37720	prsA2	0.0	ribose-phosphate pyrophosphokinase	91.67	100.00	ABF36968
JJPAMAED_32	20575	14027	PrtA	0.0	serine protease	90.07	101.68	ABJ55268
JJPAMAED_11	107414	105684	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	89.78	100.00	AAK34199
JJPAMAED_30	102388	103539	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	89.58	99.74	AAL00050
JJPAMAED_30	130766	132754	uvrB	0.0	excinuclease ABC, B subunit	89.44	100.00	AE014259_2
JJPAMAED_33	25882	27360	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.63	100.00	ADE32434
JJPAMAED_11	288276	286975	Eno	0.0	enolase	86.44	99.77	ABP90468
JJPAMAED_33	41223	43115	gidA	0.0	tRNA uridine 5-carboxymethylaminomethyl modification enzyme	85.42	98.90	ABP91129
JJPAMAED_36	52390	54099	PGM	0.0	phosphoglucomutase	84.94	99.65	ACH87041
JJPAMAED_3	2042	951	recA	0.0	DNA recombination and repair	84.64	95.36	AAL00560
JJPAMAED_33	157033	156023	pdh	0.0	pyruvate dehydrogenase	82.79	99.70	ABP91006
JJPAMAED_22	87468	86107	mnmE	0.0	central tRNA-modifying GTPase	81.80	99.56	ABP90420
JJPAMAED_11	302682	301792	bglB	3.43e-177	putative phospho--glucosidase	87.54	99.66	AAK33487
JJPAMAED_36	10901	11839	SP_0676	7.61e-170	transcription facot	81.79	97.20	AAK74821
JJPAMAED_36	55122	54265	metF	3.85e-169	methionine biosynthesis enzymes	87.06	99.31	AAK74739
JJPAMAED_22	223770	223066	covR	4.10e-126	responder protein	85.11	100.00	AAK71319
JJPAMAED_32	57771	57100	rr01	4.69e-126	response regulator	84.38	99.56	CAB54566
JJPAMAED_36	47725	47054	ciaR	8.53e-126	two component system response regulator	86.16	99.12	AIK75708
JJPAMAED_36	47725	47057	CiaR	1.58e-125	two-component response regulator	87.44	99.55	AAK74935
JJPAMAED_31	161548	162234	CovR	4.74e-120	serves to repress GAS virulence factor-encoding genes	81.66	100.00	ACE75886
JJPAMAED_22	223770	223066	walR	7.53e-120	DNA-binding response regulator	81.70	100.00	ANC99504
JJPAMAED_3	776	381	SpxA2	4.22e-76	transcriptional regulator	91.67	100.00	ERL21461
JJPAMAED_22	98935	99336	SpxA1	2.87e-69	transcriptional regulator	82.09	100.00	ERL19273
JJPAMAED_2	46366	46779	GrpE	3.41e-67	protein grpE	80.44	80.59	ABP89267
JJPAMAED_31	184759	185046	spr0479	5.74e-48	essential gene	85.42	98.97	AAK99283
JJPAMAED_11	451862	451608	spr1327	2.73e-44	essential gene	92.94	100.00	AAL00131
JJPAMAED_33	72228	71965	spr0175	9.60e-43	pathogenitcity related	85.23	100.00	AAK98979
JJPAMAED_31	4143	4634	RopE (M5005_Spy_1611)	1.05e-72	probable DNA-directed RNA polymerase subunit delta	82.93	85.86	AAK34603
JJPAMAED_1	55465	57765	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	83.09	98.08	MYN69560
JJPAMAED_33	120346	121365	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	97.35	100.00	ABJ55451