Genome ID:GCA_009738205.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 20 | 31 | 36.91 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBDNCGFP_1 | 1394906 | 1395643 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GBDNCGFP_1 | 1394906 | 1395643 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBDNCGFP_1 | 1394909 | 1395643 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GBDNCGFP_1 | 1158823 | 1159554 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 94.81 | 100.00 | WP_011681176 |
| GBDNCGFP_1 | 1158823 | 1159554 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 94.54 | 100.00 | WP_011226048 |
| GBDNCGFP_1 | 516226 | 517077 | rfbD | 0.0 | Capsule | Immune modulation | 94.13 | 100.00 | WP_014621820 |
| GBDNCGFP_1 | 1158823 | 1159554 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 94.13 | 100.00 | WP_011227248 |
| GBDNCGFP_1 | 519339 | 520148 | STU_RS16245 | 0.0 | Capsule | Immune modulation | 92.85 | 99.88 | WP_002948020 |
| GBDNCGFP_1 | 522405 | 524161 | STU_RS16230 | 0.0 | Capsule | Immune modulation | 92.60 | 98.43 | WP_011226325 |
| GBDNCGFP_1 | 520148 | 521353 | STU_RS16240 | 0.0 | Capsule | Immune modulation | 92.37 | 100.00 | WP_011226326 |
| GBDNCGFP_1 | 518399 | 519355 | STU_RS16250 | 0.0 | Capsule | Immune modulation | 91.85 | 100.00 | WP_011226328 |
| GBDNCGFP_1 | 517254 | 518402 | STU_RS16255 | 0.0 | Capsule | Immune modulation | 91.57 | 99.83 | WP_041828290 |
| GBDNCGFP_1 | 1310742 | 1311335 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 91.08 | 100.00 | WP_011226149 |
| GBDNCGFP_1 | 1052242 | 1053900 | fbp54 | 0.0 | FBPs | Adherence | 91.08 | 99.94 | WP_011227179 |
| GBDNCGFP_1 | 521374 | 522408 | STU_RS16235 | 0.0 | Capsule | Immune modulation | 91.00 | 99.15 | WP_002948022 |
| GBDNCGFP_1 | 1159555 | 1161015 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 90.92 | 99.86 | WP_011681177 |
| GBDNCGFP_1 | 1310742 | 1311335 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 90.91 | 100.00 | WP_011226149 |
| GBDNCGFP_1 | 1310742 | 1311335 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 90.91 | 100.00 | WP_011226149 |
| GBDNCGFP_1 | 1159555 | 1161015 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 90.78 | 100.00 | WP_011226049 |
| GBDNCGFP_1 | 1159555 | 1161015 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 89.97 | 100.00 | WP_041827043 |
| GBDNCGFP_1 | 1158122 | 1158814 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 89.90 | 100.00 | WP_011226047 |
| GBDNCGFP_1 | 1158122 | 1158814 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 89.61 | 100.00 | WP_011227247 |
| GBDNCGFP_1 | 1158122 | 1158814 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 89.47 | 100.00 | WP_011681175 |
| GBDNCGFP_1 | 1523526 | 1524829 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.24 | 99.54 | WP_000022832 |
| GBDNCGFP_1 | 421304 | 422143 | cbpD | 0.0 | Autolysin | Exoenzyme | 87.87 | 99.88 | WP_011226733 |
| GBDNCGFP_1 | 1981389 | 1982399 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.28 | 99.80 | WP_002986042 |
| GBDNCGFP_1 | 896423 | 897184 | srtA | 0.0 | Sortase A | Exoenzyme | 83.88 | 99.87 | - |
| GBDNCGFP_1 | 1309426 | 1310472 | rfbB | 0.0 | Capsule | Immune modulation | 83.49 | 99.90 | WP_002263087 |
| GBDNCGFP_1 | 134775 | 136058 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.53 | 99.61 | WP_000107753 |
| GBDNCGFP_1 | 1311335 | 1312204 | rfbA | 0.0 | Capsule | Immune modulation | 80.28 | 99.77 | WP_002904719 |
| GBDNCGFP_1 | 1157442 | 1158112 | STU_RS14635 | 1.29e-146 | Capsule | Immune modulation | 80.98 | 90.28 | WP_011226046 |
| GBDNCGFP_1 | 1157442 | 1158112 | STER_RS05305 | 6.02e-145 | Capsule | Immune modulation | 80.83 | 90.28 | WP_011681174 |
| GBDNCGFP_1 | 1157510 | 1158112 | STR_RS05250 | 6.11e-135 | Capsule | Immune modulation | 81.46 | 80.13 | WP_011227246 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GBDNCGFP_1 | 893733 | 892750 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 96.95 | 100.00 | AAK75326 |
| GBDNCGFP_1 | 905320 | 906393 | MntE | 0.0 | manganese homeostasis | 96.09 | 99.72 | ABF32167 |
| GBDNCGFP_1 | 1843809 | 1846115 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 94.41 | 99.22 | AAK74619 |
| GBDNCGFP_1 | 1621687 | 1620719 | spr0084 | 0.0 | pathogenitcity related | 93.19 | 98.48 | AAK98888 |
| GBDNCGFP_1 | 925461 | 927707 | metE | 0.0 | methionine biosynthesis enzymes | 92.92 | 100.00 | AAK74738 |
| GBDNCGFP_1 | 761278 | 759797 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.92 | 100.00 | ABJ54480 |
| GBDNCGFP_1 | 24333 | 25304 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 91.67 | 100.00 | ABF36968 |
| GBDNCGFP_1 | 839176 | 845649 | PrtA | 0.0 | serine protease | 91.44 | 100.61 | ABJ55268 |
| GBDNCGFP_1 | 1337580 | 1335850 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 89.95 | 100.00 | AAK34199 |
| GBDNCGFP_1 | 502595 | 504583 | uvrB | 0.0 | excinuclease ABC, B subunit | 89.74 | 100.00 | AE014259_2 |
| GBDNCGFP_1 | 1699755 | 1698604 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.58 | 99.74 | AAL00050 |
| GBDNCGFP_1 | 2182099 | 2180621 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.83 | 100.00 | ADE32434 |
| GBDNCGFP_1 | 1524829 | 1523528 | Eno | 0.0 | enolase | 86.44 | 99.77 | ABP90468 |
| GBDNCGFP_1 | 2166758 | 2164866 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 85.74 | 98.90 | ABP91129 |
| GBDNCGFP_1 | 930625 | 928916 | PGM | 0.0 | phosphoglucomutase | 84.76 | 99.65 | ACH87041 |
| GBDNCGFP_1 | 59475 | 60566 | recA | 0.0 | DNA recombination and repair | 84.64 | 95.36 | AAL00560 |
| GBDNCGFP_1 | 2033069 | 2034079 | pdh | 0.0 | pyruvate dehydrogenase | 83.38 | 99.70 | ABP91006 |
| GBDNCGFP_1 | 1067826 | 1066465 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.89 | 99.56 | ABP90420 |
| GBDNCGFP_1 | 1540797 | 1539907 | bglB | 2.38e-176 | putative phospho--glucosidase | 87.20 | 99.66 | AAK33487 |
| GBDNCGFP_1 | 970591 | 969641 | SP_0676 | 3.24e-169 | transcription facot | 81.39 | 98.45 | AAK74821 |
| GBDNCGFP_1 | 927897 | 928754 | metF | 7.27e-169 | methionine biosynthesis enzymes | 87.76 | 99.31 | AAK74739 |
| GBDNCGFP_1 | 1374447 | 1375304 | mtsA | 6.28e-151 | substrate-binding lipoprotein of manganese transporter | 80.49 | 92.86 | AIK76191 |
| GBDNCGFP_1 | 821199 | 821870 | rr01 | 4.71e-126 | response regulator | 84.82 | 99.56 | CAB54566 |
| GBDNCGFP_1 | 1197355 | 1196651 | covR | 1.39e-125 | responder protein | 85.53 | 100.00 | AAK71319 |
| GBDNCGFP_1 | 935291 | 935962 | ciaR | 9.79e-124 | two component system response regulator | 85.71 | 99.12 | AIK75708 |
| GBDNCGFP_1 | 935291 | 935959 | CiaR | 1.22e-123 | two-component response regulator | 87.00 | 99.55 | AAK74935 |
| GBDNCGFP_1 | 287589 | 288275 | CovR | 1.84e-119 | serves to repress GAS virulence factor-encoding genes | 82.10 | 100.00 | ACE75886 |
| GBDNCGFP_1 | 1197355 | 1196651 | walR | 1.23e-118 | DNA-binding response regulator | 81.70 | 100.00 | ANC99504 |
| GBDNCGFP_1 | 61827 | 62222 | SpxA2 | 2.16e-74 | transcriptional regulator | 91.67 | 100.00 | ERL21461 |
| GBDNCGFP_1 | 1081812 | 1082213 | SpxA1 | 1.40e-68 | transcriptional regulator | 82.09 | 100.00 | ERL19273 |
| GBDNCGFP_1 | 113427 | 113840 | GrpE | 1.81e-67 | protein grpE | 82.61 | 80.59 | ABP89267 |
| GBDNCGFP_1 | 136225 | 136716 | RopE (M5005_Spy_1611) | 1.06e-71 | probable DNA-directed RNA polymerase subunit delta | 82.93 | 85.86 | AAK34603 |
| GBDNCGFP_1 | 1843809 | 1846109 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 83.22 | 98.08 | MYN69560 |
| GBDNCGFP_1 | 2070297 | 2069278 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 85.88 | 100.00 | ABJ55451 |