Genome ID:GCA_009863735.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 2 | 2.83 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDOHPBJL_16 | 8002 | 9378 | tet(L) | ARO:3000179 | tet(L) | 98.25 | 100.00 | M11036.1 |
| JDOHPBJL_16 | 5883 | 7808 | tet(M) | ARO:3000186 | tet(M) | 98.60 | 100.31 | AB039845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JDOHPBJL_16 | 8003 | 9378 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.49 | 99.93 | AY081910 |
| JDOHPBJL_16 | 5883 | 7808 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.43 | 100.00 | X75073 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDOHPBJL_16 | 5883 | 7805 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.22 | 100.00 | WP_000691727.1 |
| JDOHPBJL_16 | 8002 | 9375 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JDOHPBJL_2 | 54822 | 55529 | WalR | 2.07e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| JDOHPBJL_12 | 104704 | 104901 | CspR | 3.00e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| JDOHPBJL_12 | 104704 | 104898 | CspA | 1.47e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |