Genome ID:GCA_009865815.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 2 | 2.83 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFDBFFAB_1 | 608352 | 610277 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.31 | AB039845.1 |
| EFDBFFAB_1 | 606782 | 608158 | tet(L) | ARO:3000179 | tet(L) | 98.25 | 100.00 | M11036.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EFDBFFAB_1 | 606782 | 608157 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.49 | 99.93 | AY081910 |
| EFDBFFAB_1 | 608352 | 610277 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | X75073 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFDBFFAB_1 | 608355 | 610277 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.38 | 100.00 | WP_000691727.1 |
| EFDBFFAB_1 | 606785 | 608158 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EFDBFFAB_22 | 26994 | 26287 | WalR | 2.66e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| EFDBFFAB_12 | 261661 | 261858 | CspR | 5.30e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| EFDBFFAB_12 | 261661 | 261855 | CspA | 2.58e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |