Genome ID:GCA_009866025.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ABCHNEKO_11 | 13706 | 14191 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| ABCHNEKO_11 | 10286 | 11662 | tet(L) | ARO:3000179 | tet(L) | 98.03 | 100.00 | M11036.1 |
| ABCHNEKO_11 | 8167 | 10092 | tet(M) | ARO:3000186 | tet(M) | 95.79 | 100.31 | AB039845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ABCHNEKO_11 | 10287 | 11662 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.42 | 99.93 | AY081910 |
| ABCHNEKO_11 | 13706 | 14191 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
| ABCHNEKO_11 | 8167 | 10092 | tet(M) | Doxycycline, Tetracycline, Minocycline | 96.68 | 100.00 | X75073 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ABCHNEKO_11 | 13709 | 14191 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| ABCHNEKO_11 | 10286 | 11659 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.47 | 100.00 | WP_002294500.1 |
| ABCHNEKO_11 | 8167 | 10089 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 96.57 | 100.00 | WP_063856113.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ABCHNEKO_2 | 58863 | 59570 | WalR | 2.21e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| ABCHNEKO_35 | 39621 | 39818 | CspR | 1.68e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| ABCHNEKO_35 | 39621 | 39815 | CspA | 2.91e-27 | cold shock protein | 80.00 | 98.48 | CAA62903 |