Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 1 | 7 | 7.14 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGPGODHF_1 | 490311 | 491687 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.15 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGPGODHF_1 | 490317 | 491687 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CGPGODHF_41 | 97344 | 98525 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CGPGODHF_9 | 27988 | 26852 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| CGPGODHF_17 | 12458 | 11589 | pdxS | 1.35e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| CGPGODHF_34 | 115366 | 116142 | CodY | 3.65e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| CGPGODHF_12 | 196379 | 195987 | spxA1 | 9.75e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| CGPGODHF_2 | 85936 | 85739 | CspA | 8.39e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| CGPGODHF_12 | 412008 | 412202 | CspB | 9.29e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| CGPGODHF_2 | 85936 | 85742 | CspR | 1.10e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| CGPGODHF_3 | 138072 | 137200 | lipA (SAUSA300_0829) | 4.48e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |