Genome ID:GCA_012028945.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 8 | 17.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPMHJOBB_32 | 648929 | 650098 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| OPMHJOBB_16 | 591897 | 592235 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| OPMHJOBB_16 | 591580 | 591897 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| OPMHJOBB_32 | 475632 | 476834 | blt | ARO:3003006 | blt | 99.00 | 100.00 | L32599.1 |
| OPMHJOBB_32 | 458835 | 459689 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
| OPMHJOBB_42 | 263917 | 266487 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| OPMHJOBB_52 | 136473 | 137066 | tmrB | ARO:3003059 | tmrB | 97.46 | 100.00 | AL009126.3 |
| OPMHJOBB_58 | 92131 | 93777 | vmlR | ARO:3004476 | vmlR | 98.91 | 100.18 | NC_000964.3 |
| OPMHJOBB_52 | 85975 | 87414 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.42 | JYFL01000006.1 |
| OPMHJOBB_52 | 73160 | 74080 | mphK | ARO:3004541 | mphK | 98.37 | 100.00 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OPMHJOBB_52 | 73160 | 74080 | mph(K) | Spiramycin, Telithromycin | 99.02 | 100.00 | NC_000964 |
| OPMHJOBB_32 | 458835 | 459689 | aadK | Streptomycin | 98.48 | 100.00 | M26879 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPMHJOBB_58 | 92134 | 93777 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.91 | 100.00 | WP_003234144.1 |
| OPMHJOBB_52 | 73160 | 74077 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.37 | 100.00 | WP_003246254.1 |
| OPMHJOBB_32 | 458835 | 459686 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| OPMHJOBB_23 | 38129 | 38647 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 91.91 | 100.00 | WP_003242546.1 |
| OPMHJOBB_32 | 942411 | 945008 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.60 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OPMHJOBB_32 | 846774 | 847415 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.84 | 100.00 | NP_390062 |
| OPMHJOBB_23 | 523530 | 524711 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| OPMHJOBB_23 | 954761 | 955546 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| OPMHJOBB_23 | 955572 | 956768 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| OPMHJOBB_23 | 958444 | 959382 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.15 | 100.00 | NP_391077 |
| OPMHJOBB_23 | 525194 | 526336 | capA | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_391469 |
| OPMHJOBB_32 | 997463 | 999226 | dep/capD | 0.0 | Capsule | Immune modulation | 98.98 | 100.00 | NP_389723 |
| OPMHJOBB_23 | 524726 | 525175 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| OPMHJOBB_23 | 959402 | 966538 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.54 | 100.00 | NP_391076 |
| OPMHJOBB_23 | 956797 | 958416 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 96.61 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OPMHJOBB_55 | 28025 | 26889 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| OPMHJOBB_25 | 4374 | 5243 | pdxS | 1.11e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| OPMHJOBB_16 | 280544 | 279768 | CodY | 5.14e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OPMHJOBB_23 | 682751 | 682182 | ClpP | 6.42e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| OPMHJOBB_47 | 275728 | 276120 | spxA1 | 2.72e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| OPMHJOBB_47 | 275728 | 276120 | spx | 1.62e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| OPMHJOBB_66 | 20589 | 20831 | SpoVG | 7.51e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| OPMHJOBB_58 | 44897 | 45094 | CspA | 5.30e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| OPMHJOBB_47 | 31059 | 30865 | CspB | 3.92e-27 | cold shock protein | 83.08 | 98.48 | CAD00094 |