Genome ID:GCA_012030395.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 5 | 17.15 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDLPINCJ_5 | 2225306 | 2227876 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| EDLPINCJ_5 | 1766894 | 1767232 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| EDLPINCJ_5 | 1766577 | 1766894 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| EDLPINCJ_5 | 778533 | 779702 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| EDLPINCJ_5 | 551740 | 552942 | blt | ARO:3003006 | blt | 99.75 | 100.00 | L32599.1 |
| EDLPINCJ_5 | 522694 | 523548 | aadK | ARO:3002627 | aadK | 98.94 | 100.00 | AL009126.1 |
| EDLPINCJ_1 | 251040 | 251960 | mphK | ARO:3004541 | mphK | 97.39 | 100.00 | CP010314.1 |
| EDLPINCJ_1 | 237708 | 239147 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.42 | JYFL01000006.1 |
| EDLPINCJ_1 | 187992 | 188585 | tmrB | ARO:3003059 | tmrB | 97.97 | 100.00 | AL009126.3 |
| EDLPINCJ_2 | 34073 | 35719 | vmlR | ARO:3004476 | vmlR | 98.54 | 100.18 | NC_000964.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EDLPINCJ_5 | 522694 | 523548 | aadK | Streptomycin | 99.06 | 100.00 | M26879 |
| EDLPINCJ_5 | 3509051 | 3510427 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 98.62 | 100.00 | X08034 |
| EDLPINCJ_1 | 251040 | 251960 | mph(K) | Spiramycin, Telithromycin | 97.29 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDLPINCJ_5 | 3509057 | 3510427 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.12 | 99.78 | WP_003242953.1 |
| EDLPINCJ_5 | 522694 | 523545 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.94 | 100.00 | WP_003229862.1 |
| EDLPINCJ_2 | 34073 | 35716 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.54 | 100.00 | WP_003234144.1 |
| EDLPINCJ_1 | 251043 | 251960 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.39 | 100.00 | WP_003246254.1 |
| EDLPINCJ_5 | 3506519 | 3507037 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.75 | 100.00 | WP_003242546.1 |
| EDLPINCJ_5 | 1076523 | 1079120 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| EDLPINCJ_5 | 3005949 | 3007130 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| EDLPINCJ_5 | 982068 | 982708 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 99.84 | NP_390062 |
| EDLPINCJ_5 | 2601015 | 2601800 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| EDLPINCJ_5 | 2597179 | 2598117 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.47 | 100.00 | NP_391077 |
| EDLPINCJ_5 | 3005485 | 3005934 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| EDLPINCJ_5 | 2599793 | 2600989 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.17 | 100.00 | NP_391079 |
| EDLPINCJ_5 | 3004324 | 3005466 | capA | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_391469 |
| EDLPINCJ_5 | 1128087 | 1129850 | dep/capD | 0.0 | Capsule | Immune modulation | 98.75 | 100.00 | NP_389723 |
| EDLPINCJ_5 | 2590023 | 2597159 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.72 | 100.00 | NP_391076 |
| EDLPINCJ_5 | 2598145 | 2599764 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.46 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EDLPINCJ_1 | 410423 | 409287 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| EDLPINCJ_1 | 355140 | 356009 | pdxS | 3.31e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| EDLPINCJ_5 | 1456875 | 1456099 | CodY | 2.95e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| EDLPINCJ_5 | 2856558 | 2857127 | ClpP | 2.19e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| EDLPINCJ_2 | 88834 | 88637 | CspA | 4.34e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |