Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 10 | 10.20 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LEOBILOC_52 | 406 | 1620 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
| LEOBILOC_52 | 1746 | 3196 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 92.90 | 99.11 | AF274302 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEOBILOC_52 | 406 | 1629 | mef(A) | macrolide efflux MFS transporter Mef(A) | EXACTX | 100.00 | 100.00 | WP_012102963.1 |
| LEOBILOC_52 | 1746 | 3200 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 92.99 | 99.59 | WP_000420313.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LEOBILOC_50 | 33035 | 34213 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| LEOBILOC_96 | 61174 | 59669 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| LEOBILOC_105 | 5100 | 5969 | pdxS | 1.68e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| LEOBILOC_9 | 56327 | 57103 | CodY | 1.03e-128 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| LEOBILOC_9 | 56327 | 57103 | codY | 4.96e-125 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| LEOBILOC_12 | 127735 | 127166 | ClpP | 8.54e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| LEOBILOC_56 | 73937 | 73251 | WalR | 1.41e-103 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
| LEOBILOC_8 | 6515 | 6907 | spxA1 | 8.34e-74 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| LEOBILOC_8 | 6515 | 6907 | spx | 1.80e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| LEOBILOC_36 | 17124 | 17366 | SpoVG | 7.91e-40 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| LEOBILOC_49 | 2456 | 2653 | CspA | 4.63e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| LEOBILOC_85 | 108096 | 107902 | CspD | 3.35e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| LEOBILOC_85 | 108096 | 107899 | CspB | 2.25e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| LEOBILOC_49 | 2456 | 2650 | CspR | 8.58e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |