Genome ID：GCA_013009385.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
15	10	4	18.47

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
PINDENIF_1	3627213	3628589	tet(L)	ARO:3000179	tet(L)	99.78	100.00	M11036.1
PINDENIF_1	2848690	2849544	aadK	ARO:3002627	aadK	100.00	100.00	AL009126.1
PINDENIF_1	2829981	2831183	blt	ARO:3003006	blt	100.00	100.00	L32599.1
PINDENIF_1	2665588	2666382	APH(3')-IIIa	ARO:3002647	APH(3')-IIIa	100.00	100.00	CP004067.1
PINDENIF_1	2607017	2608186	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
PINDENIF_1	1376886	1377203	ykkD	ARO:3003064	ykkD	100.00	100.00	AL009126.1
PINDENIF_1	1376548	1376886	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
PINDENIF_1	916795	919365	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	100.00	100.00	AL009126.3
PINDENIF_1	604748	606391	vmlR	ARO:3004476	vmlR	100.00	100.00	NC_000964.3
PINDENIF_1	339165	339758	tmrB	ARO:3003059	tmrB	100.00	100.00	AL009126.3
PINDENIF_1	288663	290096	lmrB	ARO:3002813	lmrB	100.00	100.00	JYFL01000006.1
PINDENIF_1	275848	276768	mphK	ARO:3004541	mphK	100.00	100.00	CP010314.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
PINDENIF_1	2848690	2849544	aadK	Streptomycin	100.00	100.00	M26879
PINDENIF_1	2665588	2666382	aph(3')-III	Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin	100.00	100.00	M26832
PINDENIF_1	275848	276768	mph(K)	Spiramycin, Telithromycin	100.00	100.00	NC_000964
PINDENIF_1	3627213	3628589	tet(L)	Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline	100.00	100.00	M29725

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
PINDENIF_1	2848693	2849544	aadK	aminoglycoside 6-adenylyltransferase AadK	EXACTX	100.00	100.00	WP_003229862.1
PINDENIF_1	2665591	2666382	aph(3')-IIIa	aminoglycoside O-phosphotransferase APH(3')-IIIa	EXACTX	100.00	100.00	WP_001096887.1
PINDENIF_1	275848	276765	mphK	macrolide 2'-phosphotransferase MphK	EXACTX	100.00	100.00	WP_003246254.1
PINDENIF_1	4285635	4286153	satA	streptothricin N-acetyltransferase SatA	EXACTX	100.00	100.00	WP_003242546.1
PINDENIF_1	3627216	3628589	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_001574277.1
PINDENIF_1	4288156	4289529	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_003242953.1
PINDENIF_1	604751	606391	vmlR	ABC-F type ribosomal protection protein VmlR	EXACTX	100.00	100.00	WP_003234144.1
PINDENIF_1	2051368	2053962	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.15	99.88	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
PINDENIF_1	3798287	3799429	capA	0.0	Capsule	Immune modulation	100.00	100.00	NP_391469
PINDENIF_1	3799912	3801093	capB	0.0	Capsule	Immune modulation	100.00	100.00	NP_391471
PINDENIF_1	3799448	3799897	capC	0.0	Capsule	Immune modulation	100.00	100.00	NP_391470
PINDENIF_1	2004710	2006473	dep/capD	0.0	Capsule	Immune modulation	100.00	100.00	NP_389723
PINDENIF_1	3404526	3405311	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391080
PINDENIF_1	3400690	3401628	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391077
PINDENIF_1	3403304	3404500	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391079
PINDENIF_1	3401656	3403275	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391078
PINDENIF_1	3393534	3400670	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391076
PINDENIF_1	2407662	2408303	hlyIII	0.0	Hemolysin III	Exotoxin	100.00	100.00	NP_390062

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
PINDENIF_1	132882	134018	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
PINDENIF_1	19074	19943	pdxS	3.21e-149	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
PINDENIF_1	1690151	1690927	CodY	3.50e-124	nutrient-responsive regulator	81.08	100.00	ACJ80679
PINDENIF_1	3646701	3647270	ClpP	2.60e-98	part of proteolytic complex	81.05	97.44	BAB94595