Genome ID:GCA_013267025.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 9 | 18.03 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JMMOACNJ_4 | 205221 | 206390 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| JMMOACNJ_25 | 92373 | 94943 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| JMMOACNJ_11 | 86753 | 87346 | tmrB | ARO:3003059 | tmrB | 97.97 | 100.00 | AL009126.3 |
| JMMOACNJ_50 | 48725 | 50371 | vmlR | ARO:3004476 | vmlR | 98.18 | 100.18 | NC_000964.3 |
| JMMOACNJ_11 | 36194 | 37627 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.00 | JYFL01000006.1 |
| JMMOACNJ_4 | 26535 | 27737 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
| JMMOACNJ_11 | 23380 | 24300 | mphK | ARO:3004541 | mphK | 98.68 | 100.00 | CP010314.1 |
| JMMOACNJ_4 | 9987 | 10841 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| JMMOACNJ_37 | 4262 | 4579 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| JMMOACNJ_37 | 3924 | 4262 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JMMOACNJ_11 | 23380 | 24300 | mph(K) | Spiramycin, Telithromycin | 99.02 | 100.00 | NC_000964 |
| JMMOACNJ_4 | 9987 | 10841 | aadK | Streptomycin | 98.60 | 100.00 | M26879 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JMMOACNJ_11 | 23380 | 24288 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.68 | 99.02 | WP_003246254.1 |
| JMMOACNJ_4 | 9987 | 10838 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| JMMOACNJ_50 | 48728 | 50371 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.18 | 100.00 | WP_003234144.1 |
| JMMOACNJ_70 | 38094 | 38612 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.64 | 100.00 | WP_003242546.1 |
| JMMOACNJ_17 | 29771 | 32368 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.41 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JMMOACNJ_16 | 1302 | 1943 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.84 | 100.00 | NP_390062 |
| JMMOACNJ_58 | 11953 | 13134 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| JMMOACNJ_33 | 35258 | 36043 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| JMMOACNJ_33 | 34036 | 35232 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| JMMOACNJ_33 | 31422 | 32360 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.25 | 100.00 | NP_391077 |
| JMMOACNJ_58 | 13617 | 14759 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| JMMOACNJ_17 | 80108 | 81871 | dep/capD | 0.0 | Capsule | Immune modulation | 98.92 | 100.00 | NP_389723 |
| JMMOACNJ_58 | 13149 | 13598 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| JMMOACNJ_33 | 24266 | 31402 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.49 | 100.00 | NP_391076 |
| JMMOACNJ_33 | 32388 | 34007 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 96.67 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JMMOACNJ_28 | 27940 | 26804 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| JMMOACNJ_56 | 4283 | 5152 | pdxS | 1.11e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JMMOACNJ_7 | 132494 | 133270 | CodY | 2.62e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JMMOACNJ_21 | 77237 | 77806 | ClpP | 1.25e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| JMMOACNJ_57 | 36378 | 35986 | spxA1 | 2.84e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| JMMOACNJ_57 | 36378 | 35986 | spx | 1.69e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| JMMOACNJ_10 | 34592 | 34350 | SpoVG | 6.11e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| JMMOACNJ_82 | 443 | 246 | CspA | 6.21e-36 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| JMMOACNJ_16 | 13173 | 13367 | CspD | 4.88e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| JMMOACNJ_34 | 31987 | 31793 | CspB | 6.23e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |