Genome ID:GCA_013267035.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 8 | 17.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDCGABEN_206 | 58109 | 59548 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.42 | JYFL01000006.1 |
| MDCGABEN_206 | 45296 | 46216 | mphK | ARO:3004541 | mphK | 99.02 | 100.00 | CP010314.1 |
| MDCGABEN_173 | 42004 | 44574 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.53 | 100.00 | AL009126.3 |
| MDCGABEN_135 | 38229 | 38822 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| MDCGABEN_225 | 32179 | 32496 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| MDCGABEN_225 | 31841 | 32179 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| MDCGABEN_174 | 14933 | 16576 | vmlR | ARO:3004476 | vmlR | 98.35 | 100.00 | NC_000964.3 |
| MDCGABEN_149 | 14878 | 15732 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| MDCGABEN_151 | 12488 | 13657 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| MDCGABEN_74 | 355 | 1557 | blt | ARO:3003006 | blt | 99.00 | 100.00 | L32599.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MDCGABEN_206 | 45296 | 46216 | mph(K) | Spiramycin, Telithromycin | 99.35 | 100.00 | NC_000964 |
| MDCGABEN_149 | 14878 | 15732 | aadK | Streptomycin | 98.71 | 100.00 | M26879 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDCGABEN_206 | 45296 | 46213 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.02 | 100.00 | WP_003246254.1 |
| MDCGABEN_149 | 14878 | 15729 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| MDCGABEN_174 | 14933 | 16573 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.35 | 100.00 | WP_003234144.1 |
| MDCGABEN_182 | 1071 | 1589 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 94.22 | 100.00 | WP_003242546.1 |
| MDCGABEN_16 | 410 | 3007 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.65 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MDCGABEN_210 | 682 | 1863 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| MDCGABEN_44 | 14913 | 15698 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.75 | 100.00 | NP_391080 |
| MDCGABEN_221 | 5951 | 6592 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | NP_390062 |
| MDCGABEN_44 | 13691 | 14887 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| MDCGABEN_40 | 39053 | 40816 | dep/capD | 0.0 | Capsule | Immune modulation | 99.32 | 100.00 | NP_389723 |
| MDCGABEN_210 | 1878 | 2327 | capC | 0.0 | Capsule | Immune modulation | 99.11 | 100.00 | NP_391470 |
| MDCGABEN_210 | 2346 | 3488 | capA | 0.0 | Capsule | Immune modulation | 98.78 | 100.00 | NP_391469 |
| MDCGABEN_44 | 3921 | 11057 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.74 | 100.00 | NP_391076 |
| MDCGABEN_44 | 11077 | 12015 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.40 | 100.00 | NP_391077 |
| MDCGABEN_44 | 12043 | 13662 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MDCGABEN_227 | 28148 | 27012 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| MDCGABEN_218 | 11244 | 10375 | pdxS | 8.09e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| MDCGABEN_5 | 942 | 166 | CodY | 5.75e-127 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| MDCGABEN_165 | 13106 | 13675 | ClpP | 1.20e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| MDCGABEN_198 | 8011 | 8403 | spxA1 | 2.76e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| MDCGABEN_198 | 8011 | 8403 | spx | 1.65e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| MDCGABEN_11 | 5932 | 6174 | SpoVG | 5.51e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| MDCGABEN_181 | 7480 | 7677 | CspA | 3.49e-33 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| MDCGABEN_52 | 1630 | 1824 | CspD | 2.56e-29 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| MDCGABEN_52 | 1630 | 1827 | CspB | 5.32e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |