Genome ID:GCA_013328835.1 PPRS_table
 

Potential risk score of uploaded strain

ARGs VFs PGs PPRS
4235.39

CARD

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
LBDDLJMD_1533916534962clbAARO:3002814clbA92.7799.71CP006845.1

Resfinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
LBDDLJMD_1533916534959cfr(B)Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin88.9099.33KR610408
LBDDLJMD_125780762579452tet(L)Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline87.07100.00X08034

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
LBDDLJMD_1533916534959clbA23S rRNA (adenine(2503)-C(8))-methyltransferase ClbABLASTX92.2499.71WP_012116915.1
LBDDLJMD_125780822579452tet(L)tetracycline efflux MFS transporter Tet(L)BLASTX86.4399.78WP_003242953.1
LBDDLJMD_1531647532165satAstreptothricin N-acetyltransferase SatABLASTX82.66100.00WP_003242546.1
LBDDLJMD_119203001922897rphCrifamycin-inactivating phosphotransferase RphCINTERNAL_STOP80.83100.00WP_087347987.1

Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
LBDDLJMD_135189973520178capB0.0CapsuleImmune modulation81.7999.66NP_391471
LBDDLJMD_135185333518982capC1.48e-113CapsuleImmune modulation83.5999.78NP_391470

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
LBDDLJMD_1133404134540tufA0.0elongation factor Tu86.5495.69AHM69299
LBDDLJMD_11862719496pdxS1.58e-150encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS84.8398.31ACE61268
LBDDLJMD_117161801716956CodY1.15e-123nutrient-responsive regulator80.69100.00ACJ80679