Genome ID:GCA_013346305.1 PPRS_table
 

Potential risk score of uploaded strain

ARGs VFs PGs PPRS
1288.31

CARD

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
OCEJEJDN_2101522102571clbAARO:3002814clbA99.43100.00CP006845.1

Resfinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
OCEJEJDN_2101522102557cfr(B)Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin88.9098.67KR610408

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
OCEJEJDN_2101522102568clbA23S rRNA (adenine(2503)-C(8))-methyltransferase ClbABLASTX99.43100.00WP_012116915.1

Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
OCEJEJDN_11506844508025capB0.0CapsuleImmune modulation82.2999.66NP_391471
OCEJEJDN_11506380506829capC5.88e-116CapsuleImmune modulation83.8199.78NP_391470

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
OCEJEJDN_73171632852tufA0.0elongation factor Tu86.5495.69AHM69299
OCEJEJDN_171244911580pdxS1.35e-152encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS84.8398.31ACE61268
OCEJEJDN_22452304453080CodY7.51e-125nutrient-responsive regulator81.08100.00ACJ80679
OCEJEJDN_45254052932spxA11.91e-70redox-responsive transcription factor83.21100.00AAF21893
OCEJEJDN_28391684113CspA2.17e-31cold shock protein89.39100.00CAA62903
OCEJEJDN_461132711521CspD1.25e-28cold shock protein81.5498.48CAC99957
OCEJEJDN_93821538021CspB8.76e-28cold shock protein84.6198.48CAD00094
OCEJEJDN_11145183144311lipA (SAUSA300_0829)2.37e-162lipoic acid synthetase80.8295.41ABD22039