Genome ID:GCA_013346305.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 8 | 8.31 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OCEJEJDN_2 | 101522 | 102571 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OCEJEJDN_2 | 101522 | 102557 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 98.67 | KR610408 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OCEJEJDN_2 | 101522 | 102568 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OCEJEJDN_11 | 506844 | 508025 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
| OCEJEJDN_11 | 506380 | 506829 | capC | 5.88e-116 | Capsule | Immune modulation | 83.81 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OCEJEJDN_7 | 31716 | 32852 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| OCEJEJDN_17 | 12449 | 11580 | pdxS | 1.35e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| OCEJEJDN_22 | 452304 | 453080 | CodY | 7.51e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OCEJEJDN_4 | 52540 | 52932 | spxA1 | 1.91e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| OCEJEJDN_2 | 83916 | 84113 | CspA | 2.17e-31 | cold shock protein | 89.39 | 100.00 | CAA62903 |
| OCEJEJDN_46 | 11327 | 11521 | CspD | 1.25e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| OCEJEJDN_9 | 38215 | 38021 | CspB | 8.76e-28 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| OCEJEJDN_11 | 145183 | 144311 | lipA (SAUSA300_0829) | 2.37e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |