Genome ID:GCA_013391745.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 2 | 2.83 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHPCIHKC_63 | 283 | 1020 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
| CHPCIHKC_43 | 3 | 617 | Streptococcus suis chloramphenicol acetyltransferase | ARO:3004455 | Ssui_ACT_CHL | 94.61 | 94.44 | AB080798.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CHPCIHKC_43 | 1 | 617 | cat(pC194) | Chloramphenicol | 100.00 | 94.78 | NC_002013 |
| CHPCIHKC_63 | 283 | 1020 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 100.00 | X72021 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHPCIHKC_63 | 283 | 1017 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.78 | 100.00 | WP_001038795.1 |
| CHPCIHKC_43 | 3 | 680 | cat-TC | type A-9 chloramphenicol O-acetyltransferase Cat-TC | INTERNAL_STOP | 92.07 | 94.54 | WP_032488880.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CHPCIHKC_4 | 21995 | 21288 | WalR | 1.73e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| CHPCIHKC_12 | 50372 | 50569 | CspR | 2.18e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| CHPCIHKC_12 | 50372 | 50566 | CspA | 1.06e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |