Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 2 | 5.39 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDFJJMPM_142 | 47971 | 48465 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| PDFJJMPM_149 | 6391 | 8310 | tet(M) | ARO:3000186 | tet(M) | 93.27 | 100.00 | AB039845.1 |
| PDFJJMPM_149 | 4821 | 6197 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| PDFJJMPM_149 | 3131 | 3778 | catA8 | ARO:3004658 | catA8 | 97.21 | 100.00 | JQ922409.1 |
| PDFJJMPM_30 | 3075 | 3938 | ANT(6)-Ia | ARO:3002626 | ANT(6)-Ia | 100.00 | 100.00 | KF648874.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PDFJJMPM_30 | 3075 | 3938 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF421157 |
| PDFJJMPM_149 | 4821 | 6196 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.71 | 99.93 | AY081910 |
| PDFJJMPM_149 | 3131 | 3778 | cat | Chloramphenicol | 99.07 | 100.00 | U35036 |
| PDFJJMPM_142 | 47971 | 48465 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
| PDFJJMPM_149 | 6391 | 8310 | tet(M) | Doxycycline, Tetracycline, Minocycline | 96.93 | 100.00 | FR671418 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PDFJJMPM_30 | 3078 | 3938 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_002294505.1 |
| PDFJJMPM_149 | 4824 | 6197 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| PDFJJMPM_142 | 47971 | 48462 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| PDFJJMPM_149 | 6394 | 8310 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 98.12 | 100.00 | WP_063856394.1 |
| PDFJJMPM_149 | 3134 | 3778 | catA | type A-8 chloramphenicol O-acetyltransferase | BLASTX | 97.67 | 100.00 | WP_002352254.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PDFJJMPM_193 | 12202 | 12909 | WalR | 1.19e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| PDFJJMPM_5 | 418 | 221 | CspR | 1.19e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| PDFJJMPM_5 | 418 | 224 | CspA | 5.81e-29 | cold shock protein | 81.54 | 98.48 | CAA62903 |