Genome ID:GCA_013456995.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DOOMIPKP_1 | 1085687 | 1086418 | ErmA | ARO:3000347 | ErmA | 85.19 | 100.00 | X03216.1 |
| DOOMIPKP_1 | 994700 | 996622 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.16 | AJ222769.3 |
| DOOMIPKP_1 | 144433 | 145170 | ErmT | ARO:3000595 | ErmT | 97.93 | 100.41 | M64090.1 |
| DOOMIPKP_1 | 143465 | 144112 | catA8 | ARO:3004658 | catA8 | 96.74 | 100.00 | JQ922409.1 |
| DOOMIPKP_1 | 30941 | 31615 | ErmB | ARO:3000375 | ErmB | 98.66 | 90.32 | AF242872.1 |
| DOOMIPKP_1 | 30184 | 30828 | vatE | ARO:3002844 | vatE | 100.00 | 100.00 | AF242872.1 |
| DOOMIPKP_1 | 26929 | 27675 | ErmB | ARO:3000375 | ErmB | 99.19 | 100.00 | AF242872.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DOOMIPKP_1 | 1085687 | 1086418 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | EU348758 |
| DOOMIPKP_1 | 30184 | 30828 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 100.00 | 100.00 | AJ488494 |
| DOOMIPKP_1 | 26929 | 27675 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | AF242872 |
| DOOMIPKP_1 | 144443 | 145170 | erm(T) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.18 | 98.91 | AF310974 |
| DOOMIPKP_1 | 994709 | 996622 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.90 | 99.69 | FN396364 |
| DOOMIPKP_1 | 143465 | 144112 | cat | Chloramphenicol | 98.77 | 100.00 | U35036 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DOOMIPKP_1 | 30184 | 30825 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | EXACTX | 100.00 | 100.00 | WP_002328813.1 |
| DOOMIPKP_1 | 994709 | 996622 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_000691721.1 |
| DOOMIPKP_1 | 26929 | 27672 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.19 | 100.00 | WP_032489723.1 |
| DOOMIPKP_1 | 30896 | 31612 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.33 | 96.37 | WP_032489723.1 |
| DOOMIPKP_1 | 144448 | 145170 | erm(T) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) | BLASTX | 97.93 | 98.77 | WP_002345002.1 |
| DOOMIPKP_1 | 143465 | 144109 | catA | type A-8 chloramphenicol O-acetyltransferase | BLASTX | 97.21 | 100.00 | WP_002352254.1 |
| DOOMIPKP_1 | 1085693 | 1086418 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 85.54 | 99.59 | WP_001072197.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||