Genome ID:GCA_013694365.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJGNFMLH_1 | 1838597 | 1839082 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| HJGNFMLH_1 | 1791613 | 1793538 | tet(W) | ARO:3000194 | tet(W) | 96.24 | 100.31 | AJ222769.3 |
| HJGNFMLH_1 | 1789177 | 1789923 | ErmB | ARO:3000375 | ErmB | 98.39 | 100.00 | AF242872.1 |
| HJGNFMLH_1 | 1788526 | 1789176 | Streptococcus suis chloramphenicol acetyltransferase | ARO:3004455 | Ssui_ACT_CHL | 94.91 | 100.00 | AB080798.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HJGNFMLH_1 | 1830881 | 1831747 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| HJGNFMLH_1 | 1788526 | 1789176 | cat(pC194) | Chloramphenicol | 100.00 | 100.00 | NC_002013 |
| HJGNFMLH_1 | 1789177 | 1789923 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.46 | 100.00 | AF242872 |
| HJGNFMLH_1 | 1791613 | 1793525 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.80 | 99.64 | FN396364 |
| HJGNFMLH_1 | 1838597 | 1839082 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJGNFMLH_1 | 1830881 | 1831744 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| HJGNFMLH_1 | 1788526 | 1789173 | catA | type A-9 chloramphenicol O-acetyltransferase | EXACTX | 100.00 | 100.00 | WP_001010387.1 |
| HJGNFMLH_1 | 1838597 | 1839079 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| HJGNFMLH_1 | 1791613 | 1793526 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 99.84 | WP_003672618.1 |
| HJGNFMLH_1 | 1789177 | 1789920 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.19 | 100.00 | WP_063844850.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||