Genome ID:GCA_014840205.2
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KJHKIMIA_11 | 56894 | 57943 | clbA | ARO:3002814 | clbA | 99.71 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KJHKIMIA_11 | 56908 | 57943 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.09 | 98.67 | KR610408 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KJHKIMIA_11 | 56897 | 57943 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 100.00 | WP_012116915.1 |
| KJHKIMIA_1 | 103446 | 106040 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.00 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KJHKIMIA_7 | 74800 | 75981 | capB | 0.0 | Capsule | Immune modulation | 81.79 | 99.66 | NP_391471 |
| KJHKIMIA_7 | 74336 | 74785 | capC | 8.34e-117 | Capsule | Immune modulation | 83.81 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KJHKIMIA_18 | 31645 | 32781 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| KJHKIMIA_29 | 12371 | 11502 | pdxS | 1.34e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| KJHKIMIA_1 | 310448 | 309672 | CodY | 4.31e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KJHKIMIA_56 | 132628 | 133020 | spxA1 | 4.20e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| KJHKIMIA_11 | 78165 | 77968 | CspA | 5.47e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| KJHKIMIA_4 | 22959 | 23153 | CspD | 3.25e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| KJHKIMIA_4 | 22959 | 23156 | CspB | 6.73e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| KJHKIMIA_11 | 78165 | 77971 | CspR | 7.17e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| KJHKIMIA_34 | 84931 | 85803 | lipA (SAUSA300_0829) | 7.10e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |