Genome ID:GCA_014866025.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 3 | 1 | 3.74 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGKEMLHH_276 | 1288 | 3261 | tet(Q) | ARO:3000191 | tet(Q) | 96.65 | 100.00 | Z21523.1 |
| NGKEMLHH_45 | 996 | 2915 | tet(O) | ARO:3000190 | tet(O) | 99.22 | 100.00 | M18896.2 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NGKEMLHH_45 | 996 | 2915 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.74 | 100.00 | M20925 |
| NGKEMLHH_276 | 1336 | 3261 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.43 | 100.00 | L33696 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGKEMLHH_45 | 996 | 2912 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.69 | 100.00 | WP_012669445.1 |
| NGKEMLHH_276 | 1336 | 3258 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.22 | 100.00 | WP_063856407.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NGKEMLHH_382 | 2099 | 3022 | tcpC | 0.0 | TcpC | Immune modulation | 100.00 | 100.00 | WP_000562556 |
| NGKEMLHH_814 | 661 | 1212 | papX | 0.0 | P fimbriae | Adherence | 97.28 | 100.00 | WP_001298062 |
| NGKEMLHH_814 | 661 | 1212 | sfaX | 0.0 | S fimbriae | Adherence | 95.65 | 100.00 | WP_011478152 |
| NGKEMLHH_409 | 1354 | 2130 | kpsM | 0.0 | K1 capsule | Invasion | 94.98 | 100.00 | WP_000124301 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGKEMLHH_409 | 1354 | 2130 | virulence_ecoli | kpsMII_K23 | Polysialic acid transport protein; Group 2 capsule | 100.0 | 100.00 | LR134208 |
| NGKEMLHH_382 | 2099 | 3022 | virulence_ecoli | tcpC | Tir domain-containing protein | 100.0 | 100.00 | GQ903008 |
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGKEMLHH_382 | 2099 | 3019 | tcpC | 0.0 | Toll/IL-1 receptor-containing (TIR-containing) protein C (TcpC), which impairs TLR signaling | 99.35 | 100.00 | ADO30450 |