Genome ID:GCA_014866025.1 PPRS_table
 

Potential risk score of uploaded strain

ARGs VFs PGs PPRS
2313.74

CARD

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
NGKEMLHH_27612883261tet(Q)ARO:3000191tet(Q)96.65100.00Z21523.1
NGKEMLHH_459962915tet(O)ARO:3000190tet(O)99.22100.00M18896.2

Resfinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
NGKEMLHH_459962915tet(O)Doxycycline, Tetracycline, Minocycline99.74100.00M20925
NGKEMLHH_27613363261tet(Q)Doxycycline, Tetracycline, Minocycline99.43100.00L33696

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
NGKEMLHH_459962912tet(O)tetracycline resistance ribosomal protection protein Tet(O)BLASTX99.69100.00WP_012669445.1
NGKEMLHH_27613363258tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX99.22100.00WP_063856407.1

Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
NGKEMLHH_38220993022tcpC0.0TcpCImmune modulation100.00100.00WP_000562556
NGKEMLHH_8146611212papX0.0P fimbriaeAdherence97.28100.00WP_001298062
NGKEMLHH_8146611212sfaX0.0S fimbriaeAdherence95.65100.00WP_011478152
NGKEMLHH_40913542130kpsM0.0K1 capsuleInvasion94.98100.00WP_000124301

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
NGKEMLHH_40913542130virulence_ecolikpsMII_K23 Polysialic acid transport protein; Group 2 capsule100.0100.00LR134208
NGKEMLHH_38220993022virulence_ecolitcpC Tir domain-containing protein100.0100.00GQ903008

PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
NGKEMLHH_38220993019tcpC0.0Toll/IL-1 receptor-containing (TIR-containing) protein C (TcpC), which impairs TLR signaling99.35100.00ADO30450