Genome ID:GCA_015602625.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 4 | 16.88 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OKPDGHDC_1 | 2408870 | 2409790 | mphK | ARO:3004541 | mphK | 98.04 | 100.00 | CP010314.1 |
| OKPDGHDC_1 | 2395543 | 2396976 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.00 | JYFL01000006.1 |
| OKPDGHDC_1 | 2345843 | 2346436 | tmrB | ARO:3003059 | tmrB | 97.97 | 100.00 | AL009126.3 |
| OKPDGHDC_1 | 2100384 | 2102027 | vmlR | ARO:3004476 | vmlR | 98.54 | 100.00 | NC_000964.3 |
| OKPDGHDC_1 | 1792279 | 1794849 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 100.00 | 100.00 | AL009126.3 |
| OKPDGHDC_1 | 1333152 | 1333490 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| OKPDGHDC_1 | 1332835 | 1333152 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| OKPDGHDC_1 | 255988 | 257157 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| OKPDGHDC_1 | 30190 | 31392 | blt | ARO:3003006 | blt | 100.00 | 100.00 | L32599.1 |
| OKPDGHDC_1 | 11801 | 12655 | aadK | ARO:3002627 | aadK | 97.89 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OKPDGHDC_1 | 2710068 | 2711444 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 100.00 | 100.00 | D12567 |
| OKPDGHDC_1 | 11801 | 12653 | aadK | Streptomycin | 98.59 | 99.77 | M26879 |
| OKPDGHDC_1 | 2408870 | 2409790 | mph(K) | Spiramycin, Telithromycin | 97.83 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OKPDGHDC_1 | 2710068 | 2711441 | tet(L) | tetracycline efflux MFS transporter Tet(L) | EXACTX | 100.00 | 100.00 | WP_063856081.1 |
| OKPDGHDC_1 | 2100384 | 2102024 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.54 | 100.00 | WP_003234144.1 |
| OKPDGHDC_1 | 2408873 | 2409790 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.04 | 100.00 | WP_003246254.1 |
| OKPDGHDC_1 | 11801 | 12652 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.89 | 100.00 | WP_003229862.1 |
| OKPDGHDC_1 | 2713424 | 2713942 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| OKPDGHDC_1 | 552139 | 554736 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.60 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OKPDGHDC_1 | 3598812 | 3599750 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| OKPDGHDC_1 | 3200865 | 3202046 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| OKPDGHDC_1 | 3597165 | 3598784 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.26 | 100.00 | NP_391078 |
| OKPDGHDC_1 | 3595129 | 3595914 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.24 | 100.00 | NP_391080 |
| OKPDGHDC_1 | 457949 | 458590 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.22 | 100.00 | NP_390062 |
| OKPDGHDC_1 | 3599770 | 3606906 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.06 | 100.00 | NP_391076 |
| OKPDGHDC_1 | 3202529 | 3203671 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| OKPDGHDC_1 | 3595940 | 3597136 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.91 | 100.00 | NP_391079 |
| OKPDGHDC_1 | 599587 | 601350 | dep/capD | 0.0 | Capsule | Immune modulation | 98.87 | 100.00 | NP_389723 |
| OKPDGHDC_1 | 3202061 | 3202510 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OKPDGHDC_1 | 2552443 | 2551307 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| OKPDGHDC_1 | 2666257 | 2665388 | pdxS | 3.11e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| OKPDGHDC_1 | 1022959 | 1022183 | CodY | 3.40e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OKPDGHDC_1 | 3343455 | 3342886 | ClpP | 2.52e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |