Genome ID：GCA_015645655.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
13	10	8	18.25

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
LIPNICOO_1	590811	591149	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
LIPNICOO_1	590494	590811	ykkD	ARO:3003064	ykkD	100.00	100.00	AL009126.1
LIPNICOO_21	488170	489024	aadK	ARO:3002627	aadK	100.00	100.00	AL009126.1
LIPNICOO_21	469461	470663	blt	ARO:3003006	blt	100.00	100.00	L32599.1
LIPNICOO_21	247144	248313	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
LIPNICOO_23	228783	231353	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	100.00	100.00	AL009126.3
LIPNICOO_22	162826	163419	tmrB	ARO:3003059	tmrB	100.00	100.00	AL009126.3
LIPNICOO_22	112323	113762	lmrB	ARO:3002813	lmrB	99.79	100.42	JYFL01000006.1
LIPNICOO_22	99508	100428	mphK	ARO:3004541	mphK	100.00	100.00	CP010314.1
LIPNICOO_27	29126	30769	vmlR	ARO:3004476	vmlR	100.00	100.00	NC_000964.3

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
LIPNICOO_21	488170	489024	aadK	Streptomycin	100.00	100.00	M26879
LIPNICOO_22	99508	100428	mph(K)	Spiramycin, Telithromycin	100.00	100.00	NC_000964
LIPNICOO_26	36260	37636	tet(L)	Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline	100.00	100.00	X08034

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
LIPNICOO_21	488173	489024	aadK	aminoglycoside 6-adenylyltransferase AadK	EXACTX	100.00	100.00	WP_003229862.1
LIPNICOO_22	99508	100425	mphK	macrolide 2'-phosphotransferase MphK	EXACTX	100.00	100.00	WP_003246254.1
LIPNICOO_26	39636	40154	satA	streptothricin N-acetyltransferase SatA	EXACTX	100.00	100.00	WP_003242546.1
LIPNICOO_26	36260	37633	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_003242953.1
LIPNICOO_27	29126	30766	vmlR	ABC-F type ribosomal protection protein VmlR	EXACTX	100.00	100.00	WP_003234144.1
LIPNICOO_25	192792	195386	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.15	99.88	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
LIPNICOO_12	398122	399264	capA	0.0	Capsule	Immune modulation	100.00	100.00	NP_391469
LIPNICOO_12	396458	397639	capB	0.0	Capsule	Immune modulation	100.00	100.00	NP_391471
LIPNICOO_12	397654	398103	capC	0.0	Capsule	Immune modulation	100.00	100.00	NP_391470
LIPNICOO_25	240281	242044	dep/capD	0.0	Capsule	Immune modulation	100.00	100.00	NP_389723
LIPNICOO_12	804789	805574	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391080
LIPNICOO_12	808472	809410	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391077
LIPNICOO_12	805600	806796	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391079
LIPNICOO_12	806825	808444	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391078
LIPNICOO_12	809430	816566	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	100.00	100.00	NP_391076
LIPNICOO_21	47792	48433	hlyIII	0.0	Hemolysin III	Exotoxin	100.00	100.00	NP_390062

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
LIPNICOO_3	31638	32774	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
LIPNICOO_6	11182	10313	pdxS	1.10e-151	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
LIPNICOO_1	277547	276771	CodY	8.24e-125	nutrient-responsive regulator	81.08	100.00	ACJ80679
LIPNICOO_12	550851	550282	ClpP	5.52e-99	part of proteolytic complex	81.05	97.44	BAB94595
LIPNICOO_1	739972	739580	spxA1	2.44e-69	redox-responsive transcription factor	83.21	100.00	AAF21893
LIPNICOO_4	20512	20754	SpoVG	2.72e-38	RNA-binding protein	80.25	79.41	AAT02994
LIPNICOO_27	76241	76044	CspA	3.37e-32	cold shock protein	90.91	100.00	CAA62903
LIPNICOO_21	60395	60589	CspD	3.97e-28	cold shock protein	81.54	98.48	CAC99957